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Job DescriptionP28303
Confidence100.00%DateThu Jan 5 11:44:36 GMT 2012
Rank1Aligned Residues436
% Identity19%Templatec3mkuA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter
Resolution4.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   17..20.........30.........40.........50.........60.........70.........80.........90......
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Query Sequence  VCMAFLTSSDKALWHLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAYG
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Template Sequence  NSVHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGV. SAIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNG
Template Known Secondary structure  TT.TTTTTTGGG
TTS
S
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   3......10.........20.........30.........40... ......50.........60.........70.........80.
 
   97..100.........110.........120.........130.........140.........150.........160.........170......
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Query Sequence  AKNPQALARTLVQPLLLALGAGALIALLRTPIIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYA
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Template Sequence  AGRQHKIPFEVHQGLILALLVSVPIIAV. LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLT
Template Known Secondary structure  SSSSSS.
SS
SSTTTTTT
TTS

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   82.......90.........100......... 110.........120.........130.........140.........150.........160
 
   177..180.........190.........200.........210.........220.........230 .........240.........250.
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Query Sequence  RAPVILLVVGNILNIVLDVWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKI. . . . . LKLRGISGEMLKTAWRGNFRR
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Template Conservation             
  
     
             
                                             
Template Sequence  KPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIR
Template Known Secondary structure 
TT
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T
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SSTTTSTTT
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   161........170.........180.........190.........200.........210.........220.........230.........240
 
   252.......260.........270.........280.........290.........300.........310.........320.........330.
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Query Sequence  LLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRA
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Template Sequence  LFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANV
Template Known Secondary structure  TT

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STTTGGGSS


TTTT
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   241........250.........260.........270.........280.........290.........300.........310.........320
 
   332.......340.........350.........360.........370.........380.........390.........400.........410.
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Query Sequence  ACRQSGIVALLFSVVYLLAGEHIIALLTSLTQIQQLADRYLIWQVILPVVGVWCYLLDGMFIGATRATEMRNSMAVAAAG
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Template Conservation                        
  
              
 
                 
   
               
Template Sequence  GLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWV
Template Known Secondary structure  TSS
SSTTGGGSS
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   321........330.........340.........350.........360.........370.........380.........390.........400
 
   412....... 420.........430.........440.........450....
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Query Sequence  FALTLLTL. . . . . . . . . PWLGNHALWLALTVFLALRGLSLAAIWRRHWRNGT
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Template Conservation    
    

           
  
   
         
          
   
Template Sequence  LGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQKQSD
Template Known Secondary structure  SSS

S
TGGGSTTT

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   401........410.........420.........430.........440.........450..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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