Job Description P28303 Confidence 8.76% Date Thu Jan 5 11:44:36 GMT 2012 Rank 17 Aligned Residues 233 % Identity 10% Template c2zqpY_ PDB info PDB header:protein transport Chain: Y: PDB Molecule:preprotein translocase secy subunit; PDBTitle: crystal structure of secye translocon from thermus2 thermophilus Resolution 6.00 Å

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		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		Q	A	Y	G	A	K	N	P	Q	A	L	A	R	T	L	V	.	Q	P	L	L	L	A	L	G	A	G	A	L	I	A	L	L	R	T	P	I	I	D	L	A	L	H	I	V	G	G	S	E	A	V	L	E	Q	A	R	R	F	L	E	I	R	W	L	S	A	P	A	S	L	A	N	L	V	L	L	G	W	L	L
Query Conservation																		.
Alig confidence																		.																																																													.	.
Template Conservation																																																																															.	.
Template Sequence		S	K	E	G	E	E	G	R	R	I	I	N	Q	Y	T	R	I	G	G	I	A	L	G	A	F	Q	G	F	F	L	A	T	A	F	L	G	A	E	G	G	R	F	L	L	P	G	W	S	P	G	P	F	F	W	F	V	V	V	V	T	Q	V	A	G	I	A	L	L	L	W	M	A	E	R	I	T	E	.	.	Y
Template Known Secondary structure				S	S	G	G	G	S																		S					T	T	T	T						S	S	S	B		S	S			T	T													T	T														.	.
Template Predicted Secondary structure																																																																															.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.			.
		172	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		G	V	Q	.	Y	A	R	A	P	V	I	L	L	V	V	G	N	I	L	N	I	V	L	D	V	W	L	V	M	G	L	H	M	N	V	Q	G	A	A	L	A	T	V	I	A	E	Y	A	T	L	L	I	G	L	L	M	V	R	K	I	L	K	L	R	G	I	S	G	E	M	L	K	T	A	W	R	G	N	F	R
Query Conservation					.
Alig confidence					.
Template Conservation
Template Sequence		G	I	G	N	G	T	S	L	I	I	F	A	G	I	V	V	E	W	L	P	Q	I	L	R	T	I	G	L	I	R	T	G	E	V	N	L	V	A	F	L	F	F	L	A	F	I	V	L	A	F	A	G	M	A	A	V	Q	Q	A	E	R	R	I	P	V	Q	Y	A	R	Y	G	G	Q	A	T	Y	I	P	I	K
Template Known Secondary structure		S	S	S													T	T	S	S													T	S	S		T	T																					T			B											S			S				B
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	L	A	L	N	R	D	I	M	L	R	S	L	L	L	Q	L	C	F	G	A	I	T	V	L	G	A	R	L	G	S	D	I	I	A	V	N	A	V	L	M	T	L	L	T	F	T	A	Y	A	L	D	G	F	A	Y	A	V	E	A	H	S	G	Q	A	Y	G	A	R	D	G	S	Q	L	L	D	V	W	R
Query Conservation
Alig confidence																																								.	.	.																												.
Template Conservation																																								.	.	.																												.
Template Sequence		L	N	A	A	G	V	I	P	I	I	F	A	A	A	I	L	Q	I	P	I	F	L	A	A	P	F	Q	D	N	P	V	L	Q	G	I	A	N	F	.	.	.	F	N	P	T	R	P	S	G	L	F	I	E	V	L	L	V	I	L	F	T	Y	V	Y	T	A	V	Q	.	F	D	P	K	R	I	A	E	S	L	R
Template Known Secondary structure		S	S	S		S	S										T	T					T	T	T	T		S	S	S	T	T								.	.	.	S		T	T	S																			T	T	T	S	.	S									T	T
Template Predicted Secondary structure																																								.	.	.																												.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.				.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330		.	.	.	.	.	.	.	.	.	340	.
		331
Predicted Secondary structure
Query SS confidence
Query Sequence		A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		342

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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