Job Description P18777 Confidence 1.08% Date Thu Jan 5 11:37:08 GMT 2012 Rank 90 Aligned Residues 124 % Identity 10% Template c3a7kD_ PDB info PDB header:membrane protein Chain: D: PDB Molecule:halorhodopsin; PDBTitle: crystal structure of halorhodopsin from natronomonas2 pharaonis Resolution 2.00 Å

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		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		Y	S	I	W	T	P	M	G	F	F	L	T	M	F	M	G	G	P	L	L	G	Y	L	L	L	S	L	A	G	V	D	G	W	A	M	R	L	L	P	A	I	S	V	L	A	L	V	V	S	G	V	V	S	V	M	Q	G	A	E	L	A	T	I	H	S	S	V	Q	Q	A	A	A	L	V	P	D	Y	G	A	.
Query Conservation																																																																																	.
Alig confidence																																																																																	.
Template Conservation
Template Sequence		N	D	P	L	L	A	S	S	L	Y	I	N	I	A	L	A	G	L	S	I	L	L	F	V	F	M	T	R	G	L	D	D	P	R	A	K	L	I	A	V	S	T	I	L	V	P	V	V	S	I	A	S	Y	T	G	L	A	S	G	L	T	I	S	V	L	E	M	P	A	G	H	F	A	E	G	S	S	V	M	L
Template Known Secondary structure		S																										S	T	T																														T	T	T								T	T		T	T	T	T		B			S
Template Predicted Secondary structure
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
														226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	L	M	S	W	R	I	V	L	L	A	V	A	L	C	L	W	I	A	P	Q	L	K	G	Y	Q	P	A	V	P	L	L	S	V	S	F	I	L	L	L	A	G	E	L	I	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	G	E	E	V	D	G	V	V	T	M	W	G	R	Y	L	T	W	A	L	S	T	P	M	I	L	L	A	L	G	L	L	A	G	S	N	A	T	K	L	F	T	A	I	T	F	D	I	A	M	C	V	T	G	L	A	A
Template Known Secondary structure		S	S	S			B	S					T																					T	T
Template Predicted Secondary structure
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions