Job Description P18777 Confidence 55.95% Date Thu Jan 5 11:37:08 GMT 2012 Rank 2 Aligned Residues 133 % Identity 12% Template c2jagA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:halorhodopsin; PDBTitle: l1-intermediate of halorhodopsin t203v Resolution 1.93 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	S	I	W	T	P	M	G	F	F	L	T	M	F	M	G	G	P	L	L	G	Y	L	L	L	S	L	A	G	V	D	G	W	A	M	R	L	L	P	A	I	S	V	L	A	L	V	V	S	G	V	V	S	V	M	Q	G	A	E	L	A	T	I	H	S	S	V	Q	Q	A	A	A	L	V	P	D	Y	G	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	N	A	L	L	S	S	S	L	W	V	N	V	A	L	A	G	I	A	I	L	V	F	V	Y	M	G	R	T	I	R	P	G	R	P	R	L	I	W	G	A	T	L	M	I	P	L	V	S	I	S	S	Y	L	G	L	L	S	G	L	T	V	G	M	I	E	M	P	A	G	H	A	L	A	G	E	M	V	R	S
Template Known Secondary structure																												T	T	T			T	T																										T	T	T								T	T	S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.				.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.										270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.																											.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.																											.	.	.	.	.	.	.	.	.
Query Sequence		M	S	W	R	I	V	L	L	A	V	A	L	C	L	W	I	A	.	.	.	P	Q	L	K	G	Y	Q	P	A	V	P	L	L	S	V	S	F	I	L	L	L	A	G	E	L	I	.	.	.	.	.	.	.	.	.	G	R	G	V	F	Y	G	L	H	M
Query Conservation																			.	.	.																											.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.																											.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	W	G	R	Y	L	T	W	A	L	S	T	P	M	I	L	L	A	L	G	L	L	A	D	V	D	L	G	S	L	F	T	V	I	A	A	D	I	G	M	C	V	T	G	L	A	A	A	M	T	T	S	A	L	L	F	R	W	A	F	Y	A	I	S	C
Template Known Secondary structure																								T	T																												S
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions