Job Description P18777 Confidence 6.16% Date Thu Jan 5 11:37:08 GMT 2012 Rank 8 Aligned Residues 238 % Identity 8% Template c1m56G_ PDB info PDB header:oxidoreductase Chain: G: PDB Molecule:cytochrome c oxidase; PDBTitle: structure of cytochrome c oxidase from rhodobactor2 sphaeroides (wild type) Resolution 2.30 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	H	E	W	P	L	M	I	F	T	V	F	G	Q	C	V	A	G	G	F	I	V	L	A	L	A	L	L	K	G	D	L	R	A	E	A	Q	Q	R	V	I	A	C	M	F	G	L	W	V	L	M	G	I	G	F	I	A	S	M	L	H	L	G	S	P	M	R	A	F	N	S	L	N	R	V	G	A	S	A	L
Query Conservation
Alig confidence															.	.	.	.																																																					.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.																																																					.	.	.	.	.	.	.	.
Template Sequence		F	F	G	H	P	E	V	Y	I	I	V	L	P	.	.	.	.	A	F	G	I	V	S	H	V	I	A	T	F	A	K	K	P	I	F	G	Y	L	P	M	V	Y	A	M	V	A	I	G	V	L	G	F	V	V	W	A	H	H	M	Y	T	A	G	L	S	L	T	Q	Q	.	.	.	.	.	.	.	.	S	Y	F
Template Known Secondary structure															.	.	.	.														T	S			T	T															T	T	S		G	G	G	G	G	T	T	S	S							.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.	.	.																																																					.	.	.	.	.	.	.	.
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.					.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.									.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	E	I	A	S	G	S	I	F	F	A	V	G	G	I	G	W	L	L	A	M	L	K	K	L	S	P	A	L	R	T	L	W	L	I	V	T	M	V	L	G	V	I	F	V	W	M	M	V	R	V	Y	N	S	I	D	T	V	P	T	W	Y	S	I	W	T	P	M	G	F	F	L	T	M	F	M	G	G	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	M	A	T	M	V	I	A	V	P	T	G	I	K	I	F	S	W	I	A	T	M	W	G	G	S	I	E	L	K	T	P	M	L	W	A	L	G	F	L	F	L	F	T	V	G	G	V	T	G	I	V	L	S	Q	A	S	V	D	R	Y	Y	H	D	T	Y	Y	V	V	A	H	F	H	Y	V	M	S	L	G	A
Template Known Secondary structure								T																T	T	S																														S								T	T	B													T	T
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
		165	.	.	.	.	170							.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.
Query Sequence		L	L	G	Y	L	L	.	.	.	.	.	.	L	S	L	A	G	V	D	G	W	A	M	R	L	L	P	A	I	S	V	L	A	L	V	V	S	G	V	V	S	V	M	Q	G	A	E	L	A	T	I	H	S	S	V	Q	Q	A	A	A	L	V	P	D	Y	G	A	L	M	S	W	R	I	V	L	L	A	V	A	L
Query Conservation								.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.
Template Conservation
Template Sequence		V	F	G	I	F	A	G	I	Y	F	W	I	G	K	M	S	G	R	Q	Y	P	E	W	A	G	K	L	H	F	W	M	M	F	V	G	A	N	L	T	F	F	P	Q	H	F	L	G	R	Q	G	M	P	R	R	Y	I	D	Y	P	E	A	F	A	T	W	N	F	V	S	S	L	G	A	F	L	S	F	A	S	F
Template Known Secondary structure																		S																								S								T	T		B	S	S		S	S			S	T	T
Template Predicted Secondary structure
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	L	W	I	A	P	Q	L	K	G	Y	Q	P	A	V	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	F	L	G	V	I	F	Y	T	L	T	R	G	A	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		509	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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