Phyre 2 alignment of P30748 with c2kdiA

Job Description P30748
Confidence 48.05% Date Thu Jan 5 11:46:22 GMT 2012

Rank 65 Aligned Residues 63

% Identity 5% Template c2kdiA_

PDB info PDB header:signaling protein Chain: A: PDB Molecule:ubiquitin, vacuolar protein sorting-associated PDBTitle: solution structure of a ubiquitin/uim fusion protein

Resolution UNK

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	14	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.						.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure											.																																											.	.	.	.	.
Query SS confidence											.																																											.	.	.	.	.
Query Sequence	V	G	T	D	A	T	E	V	A	A	.	D	F	P	T	V	E	A	L	R	Q	H	M	A	A	Q	S	D	R	W	A	L	A	L	E	D	G	K	L	L	A	A	V	N	Q	T	L	V	S	F	D	H	P	.	.	.	.	.	L	T	D	G	D	E	V	A	F	F	P	P	V	T	G	G
Query Conservation											.																																											.	.	.	.	.
Alig confidence											.																		.	.	.	.	.																					.	.	.	.	.
Template Conservation																													.	.	.	.	.
Template Sequence	L	T	G	K	T	I	T	L	E	V	E	S	S	D	T	I	D	N	V	K	S	K	I	Q	D	K	E	G	.	.	.	.	.	I	P	P	D	Q	Q	R	L	I	W	A	G	K	Q	L	E	D	G	R	T	L	S	D	Y	N	I	Q	R	E	S	T	L	H	L	V	L	R	L	R	G	G
Template Known Secondary structure	T	T										T	T		B														.	.	.	.	.			G	G	G						T	T					T	T		B	T	T	T	T	T			S	S											S	S
Template Predicted Secondary structure																													.	.	.	.	.
Template SS confidence
	17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.						.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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