Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	V	I	S	R	H	V	A	I	P	D	G	E	L	E	I	T	A	I	R	A	Q	G	A	G	G	Q	H	V	N	K	T	S	T	A	I	H	L	R	F	D	I	R	A	S	S	L	P	E	Y	Y	K	E	R	L	L	A	A	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?															?			?		?	?																																?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		H	H	L	I	S	S	D	G	V	I	V	I	K	A	Q	E	Y	R	S	Q	E	L	N	R	E	A	A	L	A	R	L	V	A	M	I	K	E	L	T	T	E	K	K	A	R	R	P	T	R	P	T	R	A	S	K	E	R	R	L	A
Secondary structure
SS confidence
Disorder		?	?	?														?	?	?																				?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence		S	K	A	Q	K	S	S	V	K	A	M	R	G	K	V	R	S	G	R	E
Secondary structure
SS confidence
Disorder											?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2jy9 chain A Region: 1 - 138 Aligned: 138 Modelled: 138 Confidence: 100.0% Identity: 84% PDB header:hydrolase Chain: A: PDB Molecule:putative trna hydrolase domain; PDBTitle: nmr structure of putative trna hydrolase domain from2 salmonella typhimurium. northeast structural genomics3 consortium target str220 Phyre2 PDB 2jva chain A Region: 1 - 103 Aligned: 103 Modelled: 103 Confidence: 100.0% Identity: 62% PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase domain protein; PDBTitle: nmr solution structure of peptidyl-trna hydrolase domain protein from2 pseudomonas syringae pv. tomato. northeast structural genomics3 consortium target psr211 Phyre2 PDB 1j26 chain A Region: 7 - 101 Aligned: 95 Modelled: 95 Confidence: 100.0% Identity: 26% Fold: dsRBD-like Superfamily: Peptidyl-tRNA hydrolase domain-like Family: Peptidyl-tRNA hydrolase domain Phyre2 PDB 2ihr chain 1 Region: 5 - 97 Aligned: 69 Modelled: 69 Confidence: 99.9% Identity: 38% PDB header:translation Chain: 1: PDB Molecule:peptide chain release factor 2; PDBTitle: rf2 of thermus thermophilus Phyre2 PDB 3d5c chain X Region: 6 - 114 Aligned: 85 Modelled: 85 Confidence: 99.9% Identity: 33% PDB header:ribosome Chain: X: PDB Molecule:peptide chain release factor 1; PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 30s subunit, release factor 1 (rf1), two trna, and3 mrna molecules of the second 70s ribosome. the entire crystal4 structure contains two 70s ribosomes as described in remark 400. Phyre2 PDB 2b3t chain B domain 1 Region: 1 - 107 Aligned: 83 Modelled: 83 Confidence: 99.9% Identity: 35% Fold: Release factor Superfamily: Release factor Family: Release factor Phyre2 PDB 1gqe chain A Region: 1 - 97 Aligned: 73 Modelled: 71 Confidence: 99.9% Identity: 34% Fold: Release factor Superfamily: Release factor Family: Release factor Phyre2 PDB 1rq0 chain A Region: 1 - 97 Aligned: 69 Modelled: 73 Confidence: 99.6% Identity: 35% Fold: Release factor Superfamily: Release factor Family: Release factor Phyre2 PDB 1zbt chain A Region: 1 - 97 Aligned: 64 Modelled: 71 Confidence: 99.2% Identity: 27% PDB header:translation Chain: A: PDB Molecule:peptide chain release factor 1; PDBTitle: crystal structure of peptide chain release factor 1 (rf-1) (smu.1085)2 from streptococcus mutans at 2.34 a resolution Phyre2 PDB 2z2j chain A Region: 1 - 29 Aligned: 27 Modelled: 29 Confidence: 60.6% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of peptidyl-trna hydrolase from mycobacterium2 tuberculosis Phyre2 PDB 3v2i chain A Region: 1 - 29 Aligned: 27 Modelled: 29 Confidence: 59.7% Identity: 22% PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: structure of a peptidyl-trna hydrolase (pth) from burkholderia2 thailandensis Phyre2 PDB 3nea chain A Region: 1 - 29 Aligned: 27 Modelled: 29 Confidence: 51.8% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of peptidyl-trna hydrolase from francisella2 tularensis Phyre2 PDB 1ryb chain A Region: 1 - 29 Aligned: 27 Modelled: 29 Confidence: 50.5% Identity: 22% Fold: Phosphorylase/hydrolase-like Superfamily: Peptidyl-tRNA hydrolase-like Family: Peptidyl-tRNA hydrolase-like Phyre2 PDB 2pth chain A Region: 1 - 29 Aligned: 27 Modelled: 29 Confidence: 46.2% Identity: 22% Fold: Phosphorylase/hydrolase-like Superfamily: Peptidyl-tRNA hydrolase-like Family: Peptidyl-tRNA hydrolase-like Phyre2 PDB 2ctk chain A domain 1 Region: 24 - 106 Aligned: 59 Modelled: 64 Confidence: 39.7% Identity: 25% Fold: Eukaryotic type KH-domain (KH-domain type I) Superfamily: Eukaryotic type KH-domain (KH-domain type I) Family: Eukaryotic type KH-domain (KH-domain type I) Phyre2 PDB 2ctl chain A domain 1 Region: 24 - 99 Aligned: 57 Modelled: 60 Confidence: 36.9% Identity: 19% Fold: Eukaryotic type KH-domain (KH-domain type I) Superfamily: Eukaryotic type KH-domain (KH-domain type I) Family: Eukaryotic type KH-domain (KH-domain type I) Phyre2 PDB 1vig chain A Region: 24 - 95 Aligned: 48 Modelled: 53 Confidence: 35.9% Identity: 17% Fold: Eukaryotic type KH-domain (KH-domain type I) Superfamily: Eukaryotic type KH-domain (KH-domain type I) Family: Eukaryotic type KH-domain (KH-domain type I) Phyre2 PDB 2cte chain A domain 1 Region: 24 - 101 Aligned: 54 Modelled: 59 Confidence: 35.8% Identity: 19% Fold: Eukaryotic type KH-domain (KH-domain type I) Superfamily: Eukaryotic type KH-domain (KH-domain type I) Family: Eukaryotic type KH-domain (KH-domain type I) Phyre2 PDB 1x4n chain A domain 1 Region: 24 - 98 Aligned: 53 Modelled: 56 Confidence: 35.2% Identity: 11% Fold: Eukaryotic type KH-domain (KH-domain type I) Superfamily: Eukaryotic type KH-domain (KH-domain type I) Family: Eukaryotic type KH-domain (KH-domain type I) Phyre2 PDB 2ctf chain A domain 1 Region: 24 - 98 Aligned: 48 Modelled: 48 Confidence: 30.1% Identity: 25% Fold: Eukaryotic type KH-domain (KH-domain type I) Superfamily: Eukaryotic type KH-domain (KH-domain type I) Family: Eukaryotic type KH-domain (KH-domain type I) Phyre2 1 c2jy9A_ 2 c2jvaA_ 3 d1j26a_ 4 c2ihr1_ 5 c3d5cX_ 6 d2b3tb1 7 d1gqea_ 8 d1rq0a_ 9 c1zbtA_ 10 c2z2jA_ 11 c3v2iA_ 12 c3neaA_ 13 d1ryba_ 14 d2ptha_ 15 d2ctka1 16 d2ctla1 17 d1viga_ 18 d2ctea1 19 d1x4na1 20 d2ctfa1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2jy9A_ 100.0 84 PDB header:hydrolase Chain: A: PDB Molecule:putative trna hydrolase domain; PDBTitle: nmr structure of putative trna hydrolase domain from2 salmonella typhimurium. northeast structural genomics3 consortium target str220 2 c2jvaA_ 100.0 62 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase domain protein; PDBTitle: nmr solution structure of peptidyl-trna hydrolase domain protein from2 pseudomonas syringae pv. tomato. northeast structural genomics3 consortium target psr211 3 d1j26a_ 100.0 26 Fold:dsRBD-like Superfamily:Peptidyl-tRNA hydrolase domain-like Family:Peptidyl-tRNA hydrolase domain 4 c2ihr1_ 99.9 38 PDB header:translation Chain: 1: PDB Molecule:peptide chain release factor 2; PDBTitle: rf2 of thermus thermophilus 5 c3d5cX_ 99.9 33 PDB header:ribosome Chain: X: PDB Molecule:peptide chain release factor 1; PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 30s subunit, release factor 1 (rf1), two trna, and3 mrna molecules of the second 70s ribosome. the entire crystal4 structure contains two 70s ribosomes as described in remark 400. 6 d2b3tb1 99.9 35 Fold:Release factor Superfamily:Release factor Family:Release factor 7 d1gqea_ 99.9 34 Fold:Release factor Superfamily:Release factor Family:Release factor 8 d1rq0a_ 99.6 35 Fold:Release factor Superfamily:Release factor Family:Release factor 9 c1zbtA_ 99.2 27 PDB header:translation Chain: A: PDB Molecule:peptide chain release factor 1; PDBTitle: crystal structure of peptide chain release factor 1 (rf-1) (smu.1085)2 from streptococcus mutans at 2.34 a resolution 10 c2z2jA_ 60.6 26 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of peptidyl-trna hydrolase from mycobacterium2 tuberculosis 11 c3v2iA_ 59.7 22 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: structure of a peptidyl-trna hydrolase (pth) from burkholderia2 thailandensis 12 c3neaA_ 51.8 26 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of peptidyl-trna hydrolase from francisella2 tularensis 13 d1ryba_ 50.5 22 Fold:Phosphorylase/hydrolase-like Superfamily:Peptidyl-tRNA hydrolase-like Family:Peptidyl-tRNA hydrolase-like 14 d2ptha_ 46.2 22 Fold:Phosphorylase/hydrolase-like Superfamily:Peptidyl-tRNA hydrolase-like Family:Peptidyl-tRNA hydrolase-like 15 d2ctka1 39.7 25 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 16 d2ctla1 36.9 19 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 17 d1viga_ 35.9 17 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 18 d2ctea1 35.8 19 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 19 d1x4na1 35.2 11 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 20 d2ctfa1 30.1 25 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 21 c2eq9C_ not modelled 25.3 18 PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdb 22 c2eq7C_ not modelled 22.5 18 PDB header:oxidoreductase Chain: C: PDB Molecule:2-oxoglutarate dehydrogenase e2 component; PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo 23 d1z2la2 not modelled 22.2 11 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 24 d2ctja1 not modelled 21.9 26 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 25 c3ipjB_ not modelled 20.9 13 PDB header:transferase Chain: B: PDB Molecule:pts system, iiabc component; PDBTitle: the crystal structure of one domain of the pts system, iiabc component2 from clostridium difficile 26 d1wvna1 not modelled 20.2 12 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 27 d2z0sa2 not modelled 17.2 17 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 28 d1ysja2 not modelled 17.2 9 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 29 d2ba0a3 not modelled 17.0 12 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 30 c2yqrA_ not modelled 16.6 23 PDB header:rna binding protein Chain: A: PDB Molecule:kiaa0907 protein; PDBTitle: solution structure of the kh domain in kiaa0907 protein 31 c2jzxA_ not modelled 16.5 13 PDB header:rna binding protein Chain: A: PDB Molecule:poly(rc)-binding protein 2; PDBTitle: pcbp2 kh1-kh2 domains 32 d1cg2a2 not modelled 15.2 13 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 33 c3dv0I_ not modelled 14.2 18 PDB header:oxidoreductase/transferase Chain: I: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase PDBTitle: snapshots of catalysis in the e1 subunit of the pyruvate2 dehydrogenase multi-enzyme complex 34 c2eq8C_ not modelled 14.1 24 PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp 35 d1w4ha1 not modelled 13.8 35 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 36 d1w85i_ not modelled 13.3 18 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 37 c1ztgD_ not modelled 13.3 23 PDB header:dna, rna binding protein/dna Chain: D: PDB Molecule:poly(rc)-binding protein 1; PDBTitle: human alpha polyc binding protein kh1 38 c1w3dA_ not modelled 13.1 18 PDB header:transferase Chain: A: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase PDBTitle: nmr structure of the peripheral-subunit binding domain of2 bacillus stearothermophilus e2p 39 d1hh2p3 not modelled 13.1 57 Fold:Alpha-lytic protease prodomain-like Superfamily:Prokaryotic type KH domain (KH-domain type II) Family:Prokaryotic type KH domain (KH-domain type II) 40 c2e3uA_ not modelled 13.0 15 PDB header:rna binding protein Chain: A: PDB Molecule:hypothetical protein ph1566; PDBTitle: crystal structure analysis of dim2p from pyrococcus horikoshii ot3 41 d1g43a_ not modelled 12.8 30 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Cellulose-binding domain family III 42 d2cyua1 not modelled 12.8 35 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 43 c1w4kA_ not modelled 12.7 19 PDB header:transferase Chain: A: PDB Molecule:pyruvate dehydrogenase e2; PDBTitle: peripheral-subunit binding domains from mesophilic,2 thermophilic, and hyperthermophilic bacteria fold by3 ultrafast, apparently two-state transitions 44 c1zwvA_ not modelled 11.8 12 PDB header:transferase Chain: A: PDB Molecule:lipoamide acyltransferase component of branched- PDBTitle: solution structure of the subunit binding domain (hbsbd) of2 the human mitochondrial branched-chain alpha-ketoacid3 dehydrogenase 45 d2ctma1 not modelled 11.6 24 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 46 d2asba3 not modelled 11.3 43 Fold:Alpha-lytic protease prodomain-like Superfamily:Prokaryotic type KH domain (KH-domain type II) Family:Prokaryotic type KH domain (KH-domain type II) 47 c1rl2A_ not modelled 11.0 24 PDB header:ribosomal protein Chain: A: PDB Molecule:protein (ribosomal protein l2); PDBTitle: ribosomal protein l2 rna-binding domain from bacillus2 stearothermophilus 48 d1rl2a1 not modelled 11.0 24 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:C-terminal domain of ribosomal protein L2 49 d1ec6a_ not modelled 11.0 14 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 50 d2axya1 not modelled 10.5 25 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 51 c2jvzA_ not modelled 9.8 13 PDB header:splicing Chain: A: PDB Molecule:far upstream element-binding protein 2; PDBTitle: solution nmr structure of the second and third kh domains2 of ksrp 52 c3a5iB_ not modelled 9.6 14 PDB header:protein transport Chain: B: PDB Molecule:flagellar biosynthesis protein flha; PDBTitle: structure of the cytoplasmic domain of flha 53 d1bala_ not modelled 8.6 38 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 54 c2g39A_ not modelled 7.7 50 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:acetyl-coa hydrolase; PDBTitle: crystal structure of coenzyme a transferase from pseudomonas2 aeruginosa 55 d1g9pa_ not modelled 7.6 40 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:omega toxin-like Family:Spider toxins 56 c1g9pA_ not modelled 7.6 40 PDB header:toxin Chain: A: PDB Molecule:omega-atracotoxin-hv2a; PDBTitle: solution structure of the insecticidal calcium channel2 blocker omega-atracotoxin-hv2a 57 d1tuaa2 not modelled 7.4 17 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 58 d1ev7a_ not modelled 6.9 23 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease NaeI 59 d1wfsa_ not modelled 6.3 16 Fold:Gelsolin-like Superfamily:Actin depolymerizing proteins Family:Cofilin-like 60 d1kn0a_ not modelled 6.2 57 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:The homologous-pairing domain of Rad52 recombinase 61 d1r3na2 not modelled 5.9 15 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 62 d1khma_ not modelled 5.9 25 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 63 c2nvvF_ not modelled 5.8 50 PDB header:hydrolase Chain: F: PDB Molecule:acetyl-coa hydrolase/transferase family protein; PDBTitle: crystal structure of the putative acetyl-coa hydrolase/transferase2 pg1013 from porphyromonas gingivalis, northeast structural genomics3 target pgr16. 64 c3gk7A_ not modelled 5.8 67 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase from2 clostridium aminobutyricum 65 c3eh7A_ not modelled 5.6 67 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: the structure of a putative 4-hydroxybutyrate coa-transferase from2 porphyromonas gingivalis w83 66 c2rbgB_ not modelled 5.5 7 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative uncharacterized protein st0493; PDBTitle: crystal structure of hypothetical protein(st0493) from2 sulfolobus tokodaii 67 d2g39a2 not modelled 5.4 50 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 68 d1x4ma1 not modelled 5.4 12 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 69 c3on3B_ not modelled 5.4 47 PDB header:oxidoreductase Chain: B: PDB Molecule:keto/oxoacid ferredoxin oxidoreductase, gamma subunit; PDBTitle: the crystal structure of keto/oxoacid ferredoxin oxidoreductase, gamma2 subunit from geobacter sulfurreducens pca 70 c3mydA_ not modelled 5.4 19 PDB header:protein transport Chain: A: PDB Molecule:flagellar biosynthesis protein flha; PDBTitle: structure of the cytoplasmic domain of flha from helicobacter pylori 71 c1h2iG_ not modelled 5.3 57 PDB header:dna-binding protein Chain: G: PDB Molecule:dna repair protein rad52 homolog; PDBTitle: human rad52 protein, n-terminal domain 72 c2cooA_ not modelled 5.3 13 PDB header:transferase Chain: A: PDB Molecule:lipoamide acyltransferase component of branched- PDBTitle: solution structure of the e3_binding domain of2 dihydrolipoamide branched chaintransacylase 73 d1x2la1 not modelled 5.3 15 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:CUT domain 74 c2oasA_ not modelled 5.2 67 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coenzyme a transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coenzyme a transferase (atoa)2 in complex with coa from shewanella oneidensis, northeast structural3 genomics target sor119.

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0