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Job DescriptionP27298
Confidence100.00%DateWed Jan 25 15:20:46 GMT 2012
Rank12Aligned Residues464
% Identity15%Templated1k9xa_
SCOP infoZincin-like Metalloproteases ("zincins"), catalytic domain Neurolysin-like
Resolution2.30

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   45....50.........60.........70.........80.........90.........100.........110.........120....
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Query Sequence  APYTWENLCQPLAEVDDVLGRIFSPVSHLNSVKNSPELREAYEQTLPLLSEYSTWVGQHEGLYKAYRDLRDGDHYATLNT
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Template Sequence  QNETIKQILAKYRRI. WAIGHAQSVLGWDLEVNMPKEGILERSVAQGELSVLSHELLLHPEFVNLVEKA. . . KGLENLNE
Template Known Secondary structure 
S.T

GGGT
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   6...10.........20 .........30.........40.........50.........60.........70... ......80.
 
   125....130.........140.........150.........160.........170.........180.........190.........200....
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Query Sequence  AQKKAVDNALRDFELSGIGLPKEKQQRYGEIATRLSELGNQYSNNVLDATMGWTKLVTDEAELAGMPESALAAAKAQAEA
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Template Sequence  YERGIVRVLDRSIRIAR. AFPPEFIREVSETTSLATKAWEEAKA. . . . . KDDFSKF. . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  T.SS
.....TT
GGGT........................
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   82.......90........ .100.........110.........120.... .....130.
 
   205....210.........220.........230.........240.........250.........260.........270.........280....
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Query Sequence  KELEGYLLTLDIPSYLPVMTYCDNQALREEMYRAYSTRASDQGPNAGKWDNSKVMEEILALRHELAQLLGFENYAFKSLA
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EPWLDKIISLAKRAAEYLGYEEEPYDALL
Template Known Secondary structure  ...................................................

SS
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   132.......140.........150.........160
 
   285... .290.........300.........310.........320.........330.........340.........350.........360..
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Query Sequence  TKMA. . ENPQQVLDFLTDLAKRARPQGEKELAQLRAFAKAEFGVDELQPWDIAYYSEKQKQHLYSISDEQLRPYFPENKA
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Template Sequence  DLYEEGLRTRDVEKMFEVLEKKLKPLLDKILE. . . . . . . . . . . . . . . . . . . . . . . . . . . . EGKVPREHPLEKEKYEREWM
Template Known Secondary structure  STT

T............................
SS
S

GGGT
B

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   161........170.........180.........190.. .......200.........210..
 
   363......370.........380.........390.........400.........410.........420.........430.........440..
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Query Sequence  VNGLFEVVKRIYGITAKERKDVDVWHPDVRFFELYDENNELRGSFYLDLYARENKRGGAWMDDCVGQMRKADGSLQKPVA
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Template Sequence  ERVNLWILQK. FGFP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LGTRARLDVSAHPFTTEFGIRDV. . . . . . . . . . .
Template Known Secondary structure  .T

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SS

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   213......220.. .... ...230.........240.........
 
   443......450.........460 .........470.........480.........490.........500......... 510.....
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Query Sequence  YLTCNFNRPVNGKPALFT. . HDEVITLFHEFGHGLHHMLTRIETAGVSGISGVPWDAVELPSQFMENWC. . . . . WEPEAL
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Template Sequence  RITTRYEG. . . . . . . . . YDFRRTILSTVHEFGHALYELQQDERFMFTPIAGGVSLGIHESQSRFWENIIGRSKEFVELIY
Template Known Secondary structure 


S.........B
TTS
GGGTTSTTSS
S
TTTTTS
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   250....... ..260.........270.........280.........290.........300.........310.........320
 
   516...520.........530.........540.........550...... ...560.........570.........580........
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Query Sequence  AFISGHYETGEPLPKELLDKMLAAKNYQAALFILRQLEFGL. . . . . . . FDFRLHAEFRPDQGAKILETLAEIKKLVAVVP
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Template Sequence  PVLKENLPFMSNYTPEDVYLYFNIVRPDFIRTEADVVTYNFHILLRFKLERLMV. . SEEIKAKDLPEMWNDEMERLLGIR
Template Known Secondary structure 
GGGGG

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GGG

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   321........330.........340.........350.........360.........370.... .....380.........390........
 
   589590.........600.........610.........620.........630... ......640.........650.........
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Query Sequence  SPSWGRFPHAFSHIFAGGYAAGYYSYLWADVLAADAFSRFEEEGI. . . . . . . . . FNRETGQSFLDNILSRGGSEEPMDLF
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Template Sequence  PRKYSEGILQDIHWAH. GSIGYFPTYTIGTLLSAQLYYHIKKDIPDFEEKVAKAEFDPIKAWLREKIHRWGSIYPPKELL
Template Known Secondary structure 
SSGGGTTTS
S.T

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TTTSTTT

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   399400.........410.... .....420.........430.........440.........450.........460.........470.......
 
   660.........670......
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Query Sequence  KRFRGREPQLDAMLEHY
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Template Sequence  KKAIGEDMDAEYFVRWV
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   478.480.........490....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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