Job Description P27298 Confidence 90.90% Date Wed Jan 25 15:20:46 GMT 2012 Rank 55 Aligned Residues 297 % Identity 13% Template c3o0yC_ PDB info PDB header:lipid binding protein Chain: C: PDB Molecule:lipoprotein; PDBTitle: the crystal structure of the putative lipoprotein from colwellia2 psychrerythraea Resolution 1.70 Å

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		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	L	A	T	K	M	A	E	N	P	Q	Q	V	L	D	F	L	T	D	L	A	K	R	A	R	P	Q	G	E	K	E	L	A	Q	L	R	A	F	A	K	A	E	F	G	V	D	E	L	Q	P	W	D	I	A	Y	Y	S	E	K	Q	K	Q	H	L	Y	S	I	S	D	E	Q	L	R	P	Y	F	P	E	N
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.
Template Sequence		I	K	Q	L	G	D	S	E	L	S	P	T	Q	I	H	Q	I	G	L	D	E	V	A	R	I	S	G	V	M	N	E	.	.	.	.	.	.	.	.	I	L	L	A	Q	G	Y	T	K	G	T	V	G	E	R	M	V	A	L	N	E	E	P	R	F	L	Y	E	D	S	I	A	G	.	.	.	.	.	.	R	E
Template Known Secondary structure										S																							.	.	.	.	.	.	.	.					T	T			S	S											T	S	G	G	G				S	S				.	.	.	.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.									.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.							.	.
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	V	N	G	L	F	E	V	V	K	R	I	Y	G	I	T	A	K	E	R	K	D	V	D	V	W	H	P	D	V	R	F	F	E	L	Y	D	E	N	N	E	L	R	G	S	F	Y	L	D	L	Y	A	R	E	N	K	R	G	G	A	W	M	D	D	C	V	G	Q	M	R	K	A	D	G	S	L	Q	K	P
Query Conservation
Alig confidence															.	.																																																											.	.	.	.	.	.	.
Template Conservation															.	.																																																											.	.	.	.	.	.	.
Template Sequence		E	L	L	S	D	I	N	G	Y	I	T	E	V	.	.	T	A	K	M	A	P	V	F	R	T	T	P	S	Y	Q	V	E	V	K	S	F	P	V	E	V	Q	D	G	A	P	G	G	Q	Y	T	S	P	A	V	D	G	S	K	P	G	I	Y	W	I	N	L	R	D	M	K	A	N	P	.	.	.	.	.	.	.
Template Known Secondary structure															.	.				T	G	G	G						S										T	T	T	T	T	T	S		S								T	T	S	S										S		G	G	G	S		.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.																																																											.	.	.	.	.	.	.
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370			.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.			.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.		.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.																	.
Query SS confidence																																	.	.																	.
Query Sequence		V	A	Y	L	T	C	N	F	N	R	P	V	N	G	K	P	A	L	F	T	H	D	E	V	I	T	L	F	H	E	F	.	.	G	H	G	L	H	H	M	L	T	R	I	E	T	A	G	V	.	S	G	I	S	G	V	P	W	D	A	V	E	L	P	S	Q	F	M	E	N	W	C	W	E	P	E	A	L	A	F
Query Conservation																																	.	.																	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.																	.																												.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																											.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	F	G	L	K	T	L	T	Y	H	E	A	N	P	G	H	H	W	Q	I	A	L	N	L	D	Q	A	E	L	P	F	L	R	R	I	A	P	Y	N	A	Y	T	E	G	W	A	L	Y	S	E	Q	V	A	Y	E	L	G	M	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												S	T	T	T										T		T	T	S						T																					T	T	T	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																											.	.	.
Template SS confidence
																					429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
		518	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	G	H	Y	E	T	G	E	P	L	P	K	E	L	L	D	K	M	L	A	A	K	N	Y	Q	A	A	L	F	I	L	R	Q	L	E	F	G	L	F	D	F	R	L	H	A	E	F	R	P	D	Q	G	A	K	I	L	E	T	L	A	E	I	K	K	L	V	A	V	V	P	S	P	S	W	G	R	F	P	H
Query Conservation
Alig confidence		.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.																.	.													.	.	.	.
Template Conservation		.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.																.	.													.	.	.	.
Template Sequence		.	.	.	.	.	.	.	Y	E	N	D	P	F	G	D	L	G	R	L	Q	A	E	.	.	.	.	.	.	.	.	.	L	F	R	A	V	R	L	V	V	D	T	G	L	H	D	.	.	K	R	W	T	R	E	Q	A	I	S	Y	M	.	.	.	.	S	E	Q	T	G	T	A	E	S	D	V	V	A	E	I	E
Template Known Secondary structure		.	.	.	.	.	.	.	T	T	T													.	.	.	.	.	.	.	.	.															T	.	.	T												.	.	.	.				S
Template Predicted Secondary structure		.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.																.	.													.	.	.	.
Template SS confidence
									487	.	.	490	.	.	.	.	.	.	.	.	.	500	.										.	.	.	.	.	.	.	.	510	.	.	.	.	.	.			.	.	.	520	.	.	.	.	.	.	.	.					.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
		598	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.		.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		A	F	S	H	I	F	A	G	G	Y	A	A	G	Y	Y	S	Y	L	W	A	D	V	L	A	A	D	A	F	S	R	F	E	E	E	.	G	I	F	N	R	E	T	G	Q	S	F	L	D	N	I	L	S	R	G	G
Query Conservation																																				.
Alig confidence					.	.	.	.	.																											.		.	.
Template Conservation					.	.	.	.	.																													.	.
Template Sequence		R	Y	M	.	.	.	.	.	A	W	P	G	Q	A	L	G	Y	K	L	G	M	L	K	I	L	S	L	R	E	Q	A	K	A	R	L	G	.	.	D	K	F	D	L	A	E	F	H	D	V	V	L	L	N	G	A
Template Known Secondary structure					.	.	.	.	.		S	T	T	G	G	G																					G	.	.	G	G												T	T		S
Template Predicted Secondary structure					.	.	.	.	.																													.	.
Template SS confidence
		545	.	.						.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.			.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions