Job Description P27298 Confidence 66.81% Date Wed Jan 25 15:20:46 GMT 2012 Rank 114 Aligned Residues 289 % Identity 14% Template c3iukB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of putative bacterial protein of unknown function2 (duf885, pf05960.1, ) from arthrobacter aurescens tc1, reveals fold3 similar to that of m32 carboxypeptidases Resolution 1.85 Å

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		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	L	A	T	K	M	A	E	N	P	Q	Q	V	L	D	F	L	T	D	L	A	K	R	A	R	P	Q	G	E	K	E	L	A	Q	L	R	A	F	A	K	A	E	F	G	V	D	E	L	Q	P	W	D	I	A	Y	Y	S	E	K	Q	K	Q	H	L	Y	S	I	S	D	E	Q	L	R	P	Y	F	P	E	N
Query Conservation
Alig confidence																											.	.	.	.	.	.	.																		.	.																										.	.	.
Template Conservation																											.	.	.	.	.	.	.																		.	.																										.	.	.
Template Sequence		S	R	S	F	I	G	A	E	V	D	L	E	E	T	Y	A	W	G	V	Q	E	L	E	R	L	.	.	.	.	.	.	.	I	S	E	Q	E	K	V	A	G	Q	I	K	P	G	A	S	I	.	.	E	E	A	K	S	I	L	N	N	D	P	A	R	Q	I	K	G	T	D	A	L	K	A	W	X	.	.	.	Q
Template Known Secondary structure							S	S																			.	.	.	.	.	.	.												S	T	T				.	.											G	G	G				S									.	.	.
Template Predicted Secondary structure																											.	.	.	.	.	.	.																		.	.																										.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.								270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.			.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.				.
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	V	N	G	L	F	E	V	V	K	R	I	Y	G	I	T	A	K	E	R	K	D	V	D	V	W	H	P	D	V	R	F	F	E	L	Y	D	E	N	N	E	L	R	G	S	F	Y	L	D	L	Y	A	R	E	N	K	R	G	G	A	W	M	D	D	C	V	G	Q	M	R	K	A	D	G	S	L	Q	K	P
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	S	D	R	A	V	S	E	L	A	D	V	H	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	P	D	V	X	K	T	L	E	C	X	I	A	P	T	D	G	I	Y	Y	T	G	P	S	D	D	F	S	R
Template Known Secondary structure												B	T	T	T	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				G	G	G	S								S											T	T	S	S	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.																																				.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.			.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.				.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
Predicted Secondary structure																																	.	.																		.	.	.
Query SS confidence																																	.	.																		.	.	.
Query Sequence		V	A	Y	L	T	C	N	F	N	R	P	V	N	G	K	P	A	L	F	T	H	D	E	V	I	T	L	F	H	E	F	.	.	G	H	G	L	H	H	M	L	T	R	I	E	T	A	G	V	S	.	.	.	G	I	S	G	V	P	W	D	A	V	E	L	P	S	Q	F	M	E	N	W	C	W	E	P	E	A	L
Query Conservation																																	.	.																		.	.	.
Alig confidence																		.	.	.													.	.																		.	.	.																											.
Template Conservation																		.	.	.																																																													.
Template Sequence		P	G	R	X	W	W	S	V	P	A	G	E	D	T	F	T	.	.	.	T	W	S	E	T	T	T	V	F	H	E	G	V	P	G	H	H	L	Q	V	A	T	A	T	Y	R	R	E	L	L	N	N	W	R	R	N	V	C	W	V	S	G	H	G	E	G	W	A	L	Y	A	E	Q	L	X	L	E	L	G	Y	.
Template Known Secondary structure											T	T						.	.	.		T	T	T								S	T	T	T											T	G	G	G	S							T																					T	T	T	.
Template Predicted Secondary structure																		.	.	.																																																													.
Template SS confidence
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.				.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
		516	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.									.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.
Query Sequence		A	F	I	S	G	H	Y	E	T	G	E	P	L	P	K	E	L	L	D	K	M	L	A	A	K	N	Y	Q	A	A	L	F	I	L	R	Q	L	E	F	G	L	F	D	F	R	L	H	A	E	.	.	.	.	.	.	.	.	F	R	P	D	Q	G	A	K	I	L	E	T	L	A	E	I	K	K	L	V	A	V	V
Query Conservation																																																			.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.														.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.																																						.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	L	K	D	P	G	D	H	X	G	X	L	D	G	Q	.	.	.	.	.	.	.	.	.	R	X	R	A	A	R	V	V	F	D	I	G	V	H	L	E	L	P	V	P	E	R	W	G	T	G	T	W	T	P	E	K	G	F	D	F	L	.	.	.	.	K	A	N	L	D	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	T		S												.	.	.	.	.	.	.	.	.															T	T		B			T	T	T		S	S	B											.	.	.	.						S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.																																						.	.	.	.
Template SS confidence
												436	.	.	.	440	.	.	.	.	.	.	.	.	.										450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.					.	.	.	490	.	.
		588	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	P	S	W	G	R	F	P	H	A	F	S	H	I	F	A	G	G	Y	A	A	G	Y	Y	S	Y	L	W	A	D	V	L	A	A	D	A	F	S	R	F	E	E	E	G	I	F	N	R	E	T	G	Q	S	F	L	D	N	I	L	S	R	G	G
Query Conservation
Alig confidence															.	.	.	.	.																															.	.	.
Template Conservation															.	.	.	.	.																															.	.	.
Template Sequence		S	E	G	Q	L	Q	F	E	F	T	R	Y	L	.	.	.	.	.	G	W	P	G	Q	A	P	S	Y	K	V	G	Q	R	L	W	E	Q	I	R	A	E	L	E	S	R	E	G	F	D	.	.	.	L	K	S	F	H	S	K	A	L	N	I	G	S
Template Known Secondary structure															.	.	.	.	.		S	T	T	S	T	T																		T	S	T	T			.	.	.											T		S
Template Predicted Secondary structure															.	.	.	.	.																															.	.	.
Template SS confidence
		493	.	.	.	.	.	.	500	.	.	.	.	.						.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.				.	.	.	.	540	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions