|   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | |
|
|
|
|
. | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
| . | . | . | . | . |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | L | Y | L | A | S | G | S | P | R | R | Q | E | L | L | A | Q | L | . |
. |
. |
. |
. |
G | V | T | F | E | R | I | V | T | G | I | E | E | Q | R | Q | P | Q | E | S | A | Q | Q | Y | V | V | R | L | A | R | E | K | A | R | A | G | V | A | Q | T | A | K | D | L | P | V | L | G | A | D | T | I | V | I | L | N | G |
Query Conservation |   |
  |
|
|
|
|
|
|
|
|   |
|   |   |
|
|   |   |   | . | . | . | . | . |
|   |   |
|   |
|   |   |   |   |
|
|
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |
|
|   |
|
|
|
|
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |
|
|   |
|   |   |
|   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |
| . | . | . | . | . | . | . |   |   |
|
|
|   |   |
|
|   |   |   |   |   |   |   | . | . |   |   |
|
|
|
|
|
|
|
|
|   |
|   |
|
Template Sequence |   |
K | I | Y | F | A | T | G | N | P | N | K | I | K | E | A | N | I | I | L | K | D | L | K | D | V | E | I | E | Q | I | K | I | S | Y | P | E | I | Q | G | T | . |
. |
. |
. |
. |
. |
. |
L | E | E | V | A | E | F | G | A | K | W | V | Y | N | I | L | . |
. |
K | K | P | V | I | V | E | D | S | G | F | F | V | E | A |
Template Known Secondary structure |   |
|  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  | T | T | T |
| T | T |
|
|  |  |  |  |
|
|
|
|
|
|
| S | S |
| . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |
| S |
|  |  |  |  |  |  |  |  |  |  | G | G |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . |
|
|
|  |  |  |  |
|
|  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | |
|
. | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
  |
  |   |
|
|
|
|
|
|
|
|
|
78 | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . |
Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
E | V | L | E | K | P | R | D | A | E | H | A | A | Q | M | L | R | K | L | S | G | Q | T | H | Q | V | M | T | A | V | A | L | A | D | S | Q | H | I | L | D | C | L | V | V | T | D |
Query Conservation |   |
. | . | . | . | . | . | . | . | . |   |
|   |   |
|
|   |   |   |
|
|
|   |   |   |
|   |   |
|
|
|   |   |
|   |
|   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
Alig confidence |   |
. | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |   |   |
|   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |
Template Sequence |   |
L | N | G | F | P | G | T | Y | S | K | F | V | Q | E | T | I | G | N | E | G | I | L | K | L | L | E | G | K | D | N | R | N | A | Y | F | K | T | V | I | G | Y | C | D | E | N | G | V | R | L | F | K | G | I | V | K |
Template Known Secondary structure |   |
G | T | T |
|  |  | T | T |  |  |  |  |  |  |  | T |  |  |  |  |  |  |  |  |  | T | T |
| S |
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . |
  |