Job Description P0AEQ1 Confidence 28.17% Date Thu Jan 5 11:23:55 GMT 2012 Rank 44 Aligned Residues 93 % Identity 24% Template c2gx5B_ PDB info PDB header:transcription Chain: B: PDB Molecule:gtp-sensing transcriptional pleiotropic repressor cody; PDBTitle: n-terminal gaf domain of transcriptional pleiotropic repressor cody Resolution 1.74 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.																		.	.	90	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	I	A	V	A	D	D	G	G	H	L	L	A	L	S	R	M	D	D	C	A	P	I	A	A	Y	I	S	Q	E	K	A	R	T	A	A	L	G	R	R	E	T	K	G	Y	E	E	M	V	N	N	G	R	T	A	F	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	P	L	L	T
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.																				.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.																				.
Template Sequence		N	I	F	V	V	S	R	R	G	K	L	L	G	Y	.	.	.	.	.	S	I	N	Q	Q	I	E	N	D	R	M	K	K	M	L	E	D	R	Q	.	F	P	E	E	Y	T	K	N	L	F	N	V	P	E	T	S	S	N	L	D	I	N	S	E	T	A	F	P	V	E	N	R	D	L	F	Q	A	G	L	T	T
Template Known Secondary structure								T	T	S	B					.	.	.	.	.			S	S														T	B	.											T			S							T	T					S		G	G	G	G	G	G	G	S	S	S
Template Predicted Secondary structure																.	.	.	.	.																				.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.						.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.				.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure																										.	.	.
Query SS confidence																										.	.	.
Query Sequence		S	L	E	G	G	V	P	V	V	V	D	G	Q	I	I	G	A	V	G	V	S	G	L	T	.	.	.	G	A	Q	D	A	Q	V	A	K	A	A	A	A	V	L	A
Query Conservation																										.	.	.
Alig confidence			.	.	.	.																				.	.	.
Template Conservation			.	.	.	.
Template Sequence		I	.	.	.	.	V	P	I	I	G	G	G	E	R	L	G	T	L	I	L	S	R	L	Q	D	Q	F	N	D	D	D	L	I	L	A	E	Y	G	A	T	V	V	G
Template Known Secondary structure			.	.	.	.						T	T											S	S
Template Predicted Secondary structure			.	.	.	.
Template SS confidence
		113					.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions