Job Description P75916 Confidence 4.30% Date Wed Jan 25 15:21:04 GMT 2012 Rank 8 Aligned Residues 135 % Identity 16% Template c3b9yA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein Resolution 1.85 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.																							.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	S	W	A	G	F	L	G	C	T	A	Y	F	A	C	P	Q	G	G	L	K	G	L	A	I	S	A	A	T	L	L	S	G	V	V	W	A	M	V	I	I	Y	G	S	A	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	H	L	E	I	L	G	Y	V	I
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	V	L	W	L	F	W	P	S	F	A	T	A	I	V	P	F	E	Q	M	P	Q	T	I	V	N	T	L	L	A	L	C	G	A	T	L	A	T	Y	F	L	S	A	L	F	H	K	G	K	A	S	I	V	D	M	A	N	A	A	L	A	G	G	V	A	I	G	S	V	C	N	I	V	G	P	V	G	A	F	V
Template Known Secondary structure														T	T	S		G	G	G																											T	T	T											T	T							T	T	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.											.	.	.	.	.	.	100									.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.
Query Sequence		T	G	I	V	A	F	L	M	C	.	.	.	.	.	.	.	.	.	.	I	Q	A	K	Q	L	L	.	.	.	.	.	.	.	.	L	S	F	V	P	G	T	F	I	G	A	C	A	T	F	A	G	Q	G	D	W	K	L	V	L	P	S	L	A	L	G	L	I	F	G	Y	A	M	K	N	S	G	L	W	L	A
Query Conservation											.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	G	L	L	G	G	A	I	S	V	V	G	F	V	F	I	Q	P	M	L	E	S	K	A	K	T	I	D	T	C	G	V	H	N	L	H	G	L	P	G	L	L	G	G	F	S	A	I	L	I	V	P	G	I	A	V	A	Q	L	T	G	I	G	I	T	L	A	L	A	L	I	G	G	V	I	A	G	A	L	I
Template Known Secondary structure																T									S					T	T						T	T														S	T	T
Template Predicted Secondary structure
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	S	A	K	T	A	H	R	E	Q	E	I	K	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	T	G	T	T	K	Q	A	Y	E	D	S	H	E
Template Known Secondary structure			T	T				S	S	T	T		G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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