Job Description P16918 Confidence 95.95% Date Wed Jan 25 15:20:40 GMT 2012 Rank 1 Aligned Residues 269 % Identity 15% Template c2oy7A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer surface protein a; PDBTitle: the crystal structure of ospa mutant Resolution 1.55 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.			.	.	.	.	.	.	460	.
Predicted Secondary structure																																															.																									.	.
Query SS confidence																																															.																									.	.
Query Sequence		D	R	I	T	I	T	D	S	L	N	R	R	E	V	L	H	T	Q	G	E	G	G	L	K	R	V	V	K	K	E	H	A	D	G	S	V	T	Q	S	Q	F	D	A	V	G	.	R	L	R	A	Q	T	D	A	A	G	R	T	T	E	Y	S	P	D	V	V	T	G	L	I	.	.	T	R	I	T	T	P	D	G
Query Conservation																																															.																									.	.
Alig confidence																																															.																			.						.	.
Template Conservation																																																																		.
Template Sequence		N	S	V	S	V	D	L	P	G	S	M	K	V	L	V	S	K	S	S	N	A	D	G	K	Y	D	L	I	A	T	V	D	A	L	E	L	S	G	T	S	D	K	N	N	G	S	G	V	L	E	G	V	K	A	D	A	S	K	V	K	L	T	I	S	.	D	D	L	G	Q	T	T	L	E	V	F	K	S	D	G
Template Known Secondary structure									G	G	G							S	S			S	S	S									T	T								S		S	S	S									T	T	S									.	T	T	S	S									T	T	S
Template Predicted Secondary structure																																																																		.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.			.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.
Query SS confidence																																							.	.
Query Sequence		R	A	S	A	F	Y	Y	N	H	H	S	Q	L	T	S	A	T	G	P	D	G	L	E	I	R	R	E	Y	D	E	W	G	R	L	I	Q	E	.	.	T	A	P	D	G	D	I	T	R	Y	R	Y	D	N	P	H	S	D	L	P	C	A	T	E	D	A	T	G	S	R	K	T	M	T	W	S	R	Y	G	Q	L
Query Conservation																																							.	.
Alig confidence								.	.	.	.	.	.	.	.																								.	.
Template Conservation								.	.	.	.	.	.	.	.
Template Sequence		S	T	L	V	S	K	.	.	.	.	.	.	.	.	K	V	T	S	K	D	K	S	S	T	Y	E	K	F	N	E	K	G	E	L	S	E	K	Y	I	T	R	A	D	K	S	S	T	Y	E	K	F	N	E	K	G	E	L	S	E	K	Y	I	T	R	A	D	K	S	S	T	Y	E	K	F	N	E	K	G	E	L
Template Known Secondary structure		S	S					.	.	.	.	.	.	.	.					T	T	S									T	T	S										T	T	S									T	T	S										T	T	S									T	T	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.
Template SS confidence
		107	.	.	110	.	.									.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		540	.	.			.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.			.	.	.	.	.	.	.	570	.	.	.	.		.	.	.	.	.	580	.	.	.	.	.											.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.
Predicted Secondary structure					.	.																					.	.													.												.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.																					.	.													.												.	.	.	.	.	.	.	.	.	.
Query Sequence		L	S	F	.	.	T	D	C	S	G	Y	V	T	R	Y	D	H	D	R	F	G	Q	V	T	A	.	.	V	H	R	E	E	G	L	S	Q	Y	R	A	.	Y	D	S	R	G	Q	L	I	A	V	K	.	.	.	.	.	.	.	.	.	.	D	T	Q	G	H	E	T	R	Y	E	Y	N	A	A	G	D	L	T	T
Query Conservation					.	.																					.	.													.												.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.																					.	.													.												.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	E	K	Y	I	T	R	A	D	K	S	S	T	Y	E	K	F	N	E	K	G	E	V	S	E	K	Y	I	T	R	A	D	G	T	R	L	E	Y	T	G	I	K	S	D	G	S	G	K	A	K	E	V	L	K	G	Y	V	L	E	G	T	L	T	A	E	K	T	T	L	V	V	K	E	G	T	V	T	L	S	K
Template Known Secondary structure									T	T	S									T	T	S										T	T	S							S			T	T	S									T	T									S	S									T	T
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		605	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.						.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.
Predicted Secondary structure																								.	.	.	.	.
Query SS confidence																								.	.	.	.	.
Query Sequence		V	I	A	P	D	G	S	R	N	G	T	Q	Y	D	A	W	G	K	A	I	C	T	.	.	.	.	.	T	Q	G	G	L	T	R	S	M	E	Y	D	A	A	G	R	V	I	R	L	T	S	E	N	G	S	H	T	T	F	R	Y	D	V	L	D
Query Conservation																								.	.	.	.	.
Alig confidence																								.	.	.	.	.
Template Conservation
Template Sequence		N	I	S	K	S	G	E	V	S	V	E	L	N	D	T	D	S	S	A	A	T	K	K	T	A	A	W	N	S	G	T	S	T	L	T	I	T	V	N	S	K	K	T	K	D	L	V	F	T	S	S	N	T	I	T	V	Q	Q	Y	D	S	N	G
Template Known Secondary structure					T	T														T	T	T								T	T	T	T							T	T										T	T	S							B		T	T	S
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions