Job Description P06616 Confidence 99.60% Date Thu Jan 5 10:59:16 GMT 2012 Rank 190 Aligned Residues 167 % Identity 22% Template c3mmpC_ PDB info PDB header:transferase Chain: C: PDB Molecule:elongation factor tu 2, elongation factor ts; PDBTitle: structure of the qb replicase, an rna-dependent rna polymerase2 consisting of viral and host proteins Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	I	D	K	S	Y	C	G	F	I	A	I	V	G	R	P	N	V	G	K	S	T	L	L	N	K	L	L	G	Q	K	I	S	I	T	S	R	K	A	Q	T	T	R	H	R	I	V	G	I	H	T	E	G	A	Y	Q	A	I	Y	V	D	T	P	G	L	H	M	E	E	K	R	A	I	N	R	L	M	N	K
Query Conservation
Alig confidence																																	.	.	.	.													.	.	.																.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.													.	.	.																.	.	.	.	.	.	.	.	.
Template Sequence		M	S	K	Q	S	K	P	H	V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	I	T	T	V	.	.	.	.	L	A	K	T	Y	G	G	T	S	H	V	E	.	.	.	Y	D	T	P	T	R	H	Y	A	H	V	D	C	P	G	.	.	.	.	.	.	.	.	.	H	A	D	Y	V	K
Template Known Secondary structure																		T	T	S													.	.	.	.													.	.	.				S	S											.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.	.	.	.													.	.	.																.	.	.	.	.	.	.	.	.
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.					.	310	.	.	.	.	.	.	.	.	.	320				.	.	.	.	.	.	.	.	.	330	.	.	.	.	.										.	.	.	.	340	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.								.	.	.	.	.	150	.
Predicted Secondary structure																					.																				.																											.	.	.	.	.	.	.
Query SS confidence																					.																				.																											.	.	.	.	.	.	.
Query Sequence		A	A	S	S	S	I	G	D	V	E	L	V	I	F	V	V	E	G	T	.	R	W	T	P	D	D	E	M	V	L	N	K	L	R	E	G	K	A	P	.	V	I	L	A	V	N	K	V	D	N	V	Q	E	K	A	D	L	L	P	H	L	Q	F	L	A	S	.	.	.	.	.	.	.	Q	M	N	F	L	D	I
Query Conservation																					.																				.																											.	.	.	.	.	.	.
Alig confidence																					.																				.																											.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	M	I	T	G	A	A	Q	M	D	G	A	I	L	V	V	A	A	T	D	G	P	M	P	Q	T	R	E	H	I	L	L	G	R	Q	V	G	V	P	Y	I	I	V	F	L	N	K	C	D	M	V	D	D	E	E	L	L	E	L	V	E	M	E	V	R	E	L	L	S	Q	Y	D	F	P	G	D	D	T	P	I
Template Known Secondary structure						T	S				S								T	T	T				T	T											T	T		S									G	G	G																					T	T	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.									160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.
Query Sequence		V	P	I	S	A	E	T	G	.	.	.	.	.	.	.	.	L	N	V	D	T	I	A	A	I	V	R	K	H	L	P	E	A	T	H	H	F	P	E	D
Query Conservation										.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	R	G	S	A	L	K	A	L	E	G	D	A	E	W	E	A	K	I	L	E	L	A	G	F	L	D	S	Y	I	P	E	P	E	R	A	I	D	K	P
Template Known Secondary structure												T																			S						G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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