Job Description P06616 Confidence 98.46% Date Thu Jan 5 10:59:16 GMT 2012 Rank 272 Aligned Residues 151 % Identity 19% Template c3dmdA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle receptor; PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus Resolution 2.21 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.							30	.	.	.	.	.	.	.	.	.	40	.	.	.														.	.	.	.	.	.	50	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	K	S	Y	C	G	F	I	A	I	V	G	R	P	N	V	G	K	S	T	L	L	N	K	L	L	.	.	.	.	.	.	G	Q	K	I	S	I	T	S	R	K	A	Q	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	R	H	R	I	V	G	I	H	T	E	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																												.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	A	E	K	P	Y	V	I	M	F	V	G	F	N	G	S	G	K	T	T	T	I	A	K	L	A	N	W	L	K	N	H	G	F	S	V	V	I	A	A	S	D	T	F	R	A	G	A	I	E	Q	L	E	E	H	A	K	R	I	G	V	K	V	I	K	H	S	Y	G	A	D	P	A	A	V	A	Y	D	A	I
Template Known Secondary structure		T	S		S										T	T	S	S															T	T										T	T															T	T							S	T	T
Template Predicted Secondary structure
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
							54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	G	A	Y	Q	A	I	Y	V	D	T	P	G	L	H	M	E	E	K	R	A	I	N	R	L	M	N	K	A	A	S	S	S	I	G	D	V	E	L	V	I	F	V	V	E	G	T	R	W	T	P	D	D	E	M	V	L	N	K	L	R	E	G	K	A	P	V	I	L	A	V	N	K	V	D	N
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.													.	.	.																																																			.
Template Conservation																			.	.	.																																																			.
Template Sequence		Q	H	A	K	A	R	G	I	D	V	V	L	I	D	T	A	G	.	.	.	R	S	E	T	N	R	N	L	M	D	E	M	K	K	I	A	R	V	T	K	P	N	L	V	I	F	V	G	D	A	L	A	G	N	A	I	V	E	Q	A	R	Q	F	N	E	A	V	K	I	D	.	G	I	I	L	T	K	L	D	A
Template Known Secondary structure								T		S								S	.	.	.	S			S	S	S																S								T	T		T	T	T												S				.						S	G	G	G
Template Predicted Secondary structure																			.	.	.																																																			.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.				.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	E	K	A	D	L	L	P	H	L	Q	F	L	A	S	Q	M	N	F	L	D	I	V	P	I	S	A	E	T	G	L	N	V	D	T	I
Query Conservation
Alig confidence																.	.	.	.	.									.	.
Template Conservation																.	.	.	.	.									.	.
Template Sequence		D	A	R	G	G	A	A	L	S	I	S	Y	V	I	.	.	.	.	.	D	A	P	I	L	F	V	G	.	.	V	G	Q	G	Y	D	D	L
Template Known Secondary structure			S	S												.	.	.	.	.	T								.	.		S	S	S	G	G	G
Template Predicted Secondary structure																.	.	.	.	.									.	.
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.						.	290	.	.	.	.	.	.			.	.	.	300	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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