Job Description P06616 Confidence 99.59% Date Thu Jan 5 10:59:16 GMT 2012 Rank 195 Aligned Residues 159 % Identity 15% Template c3cphA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:ras-related protein sec4; PDBTitle: crystal structure of sec4 in complex with rab-gdi Resolution 2.90 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	A	I	V	G	R	P	N	V	G	K	S	T	L	L	N	K	L	L	G	Q	K	I	S	I	T	S	R	K	A	Q	T	T	R	H	R	I	V	G	I	H	T	E	G	A	Y	Q	A	I	Y	V	D	T	P	G	L	H	M	E	E	K	R	A	I	N	R	L	M	N	K	A	A	S	S	S	I	G	D	V
Query Conservation
Alig confidence																																																										.	.	.
Template Conservation																																																										.	.	.
Template Sequence		K	I	L	L	I	G	D	S	G	V	G	K	S	C	L	L	V	R	F	V	E	D	K	F	N	P	S	F	I	T	T	I	G	I	D	F	K	I	K	T	V	D	I	N	G	K	K	V	K	L	Q	L	W	D	T	A	.	.	.	G	Q	E	R	F	R	T	I	T	T	A	Y	Y	R	G	A	M	G	I	I	L
Template Known Secondary structure								S	T	T	S	S																S	S	S				S											T	T											T	.	.	.	T	G	G	G	G	T								T	T		S
Template Predicted Secondary structure																																																										.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.				.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	V	I	F	V	V	E	G	T	R	W	T	P	D	D	E	M	V	L	N	K	L	R	E	G	K	A	P	V	I	L	A	V	N	K	V	D	N	V	Q	E	K	A	D	L	L	P	H	L	Q	F	L	A	S	Q	M	N	F	L	D	I	V	P	I	S	A	E	T	G	L	N	V	D	T	I	A	A	I	V
Query Conservation
Alig confidence																																																											.	.
Template Conservation																																																											.	.
Template Sequence		V	Y	D	V	T	D	E	R	T	F	T	N	I	K	Q	W	F	K	T	V	N	E	H	A	N	D	E	A	Q	L	L	L	V	G	N	K	S	D	M	E	T	R	V	V	T	A	D	Q	G	E	A	L	A	K	E	L	G	.	.	I	P	F	I	E	S	S	A	K	N	D	D	N	V	N	E	I	F	F	T	L
Template Known Secondary structure					T	T							T												T	T	T		S									T	T		S	S			S													T	.	.							B	T	T	T	T	B	S	S
Template Predicted Secondary structure																																																											.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.			.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	H	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	L	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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