Job Description P06616 Confidence 98.10% Date Thu Jan 5 10:59:16 GMT 2012 Rank 285 Aligned Residues 155 % Identity 23% Template c3b9qA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana Resolution 1.75 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.							30	.	.	.	.	.	.	.	.	.	40	.												.	.	.	.	.	.	.	.	50	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	K	S	Y	C	G	F	I	A	I	V	G	R	P	N	V	G	K	S	T	L	L	N	K	L	L	.	.	.	.	.	.	G	Q	K	I	S	I	T	S	R	K	A	Q	.	.	.	.	.	.	.	.	.	.	.	T	T	R	H	R	I	V	G	I	H	T	E	G	A	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																												.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	F	R	K	P	A	V	I	M	I	V	G	V	N	G	G	G	K	T	T	S	L	G	K	L	A	H	R	L	K	N	E	G	T	K	V	L	M	A	A	G	D	T	F	R	A	A	A	S	D	Q	L	E	I	W	A	E	R	T	G	C	E	I	V	V	A	E	K	A	K	A	A	T	V	L	S	K	A	V	K
Template Known Secondary structure			S	S	S										T	T	S																T	T											S																T
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
								56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.			.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																						.	.
Query SS confidence		.	.	.	.	.	.																						.	.
Query Sequence		.	.	.	.	.	.	Y	Q	A	I	Y	V	D	T	P	G	L	H	M	E	E	K	R	A	I	N	R	.	.	L	M	N	K	A	A	S	S	S	I	G	D	V	E	L	V	I	F	V	V	E	G	T	R	W	T	P	D	D	E	M	V	L	N	K	L	R	E	G	K	A	P	V	I	L	A	V	N	K	V	D
Query Conservation		.	.	.	.	.	.																						.	.
Alig confidence		.	.	.	.	.	.																						.	.
Template Conservation
Template Sequence		R	G	K	E	E	G	Y	D	V	V	L	C	D	T	S	G	R	L	H	T	N	Y	S	L	M	E	E	L	I	A	C	K	K	A	V	G	K	I	V	S	G	A	P	N	E	I	L	L	V	L	D	G	N	T	G	L	N	M	L	P	Q	A	R	E	F	N	E	V	V	G	I	T	G	L	I	L	T	K	L	D
Template Known Secondary structure						T	T		S										S	S																		T	T	S	T	T			S								G	G	G	G	G	G	G											T											S
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	Q	E	K	A	D	L	L	P	H	L	Q	F	L	A	S	Q	M	N	F	L	D	I	V	P	I	S	A	E	T	G	L	N	V	D	T	I
Query Conservation
Alig confidence																	.	.	.	.	.										.	.
Template Conservation																	.	.	.	.	.										.	.
Template Sequence		G	S	A	R	G	G	C	V	V	S	V	V	E	E	L	.	.	.	.	.	G	I	P	V	K	F	I	G	V	.	.	G	E	A	V	E	D	L
Template Known Secondary structure		S		S		T											.	.	.	.	.										.	.	S	S	S	G	G	G
Template Predicted Secondary structure																	.	.	.	.	.										.	.
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.						.	.	.	340	.	.	.	.	.			.	.	.	.	350	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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