Job Description P06616 Confidence 99.90% Date Thu Jan 5 10:59:16 GMT 2012 Rank 25 Aligned Residues 183 % Identity 14% Template c2wwwB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:methylmalonic aciduria type a protein, PDBTitle: crystal structure of methylmalonic acidemia type a protein Resolution 2.64 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.							30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																						.	.	.	.	.	.																													.	.
Query SS confidence																						.	.	.	.	.	.																													.	.
Query Sequence		F	I	A	I	V	G	R	P	N	V	G	K	S	T	L	L	N	K	L	L	.	.	.	.	.	.	G	Q	K	I	S	I	T	S	R	K	A	Q	T	T	R	H	R	I	V	G	I	H	T	E	G	A	Y	Q	.	.	A	I	Y	V	D	T	P	G	L	H	M	E	E	K	R	A	I	N	R	L	M	N	K	A
Query Conservation																						.	.	.	.	.	.																													.	.
Alig confidence																						.	.	.	.	.	.																													.	.																		.	.	.	.
Template Conservation																																																																											.	.	.	.
Template Sequence		R	V	G	L	S	G	P	P	G	A	G	K	S	T	F	I	E	Y	F	G	K	M	L	T	E	R	G	H	K	L	S	V	L	A	V	D	T	E	L	S	R	D	M	N	A	Y	I	R	P	T	R	T	T	N	E	A	I	L	L	C	E	G	A	G	Y	D	I	I	L	I	E	T	V	.	.	.	.	G	Q	S
Template Known Secondary structure									T	T	S	S															T	T												S	S	S		T	T							T	T											T	T		S								.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.					.	.	220
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.									.	.	.	150	.	.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.	.
Query Sequence		A	S	S	S	I	G	D	V	E	L	V	I	F	V	V	E	G	T	R	W	T	P	D	D	E	M	V	L	N	K	L	R	E	G	K	A	P	V	I	L	A	V	N	K	V	D	N	V	Q	E	K	A	D	L	L	P	H	L	Q	F	L	A	S	Q	M	.	.	.	.	.	.	.	.	N	F	L	D	I	V	P
Query Conservation																																																																			.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	F	A	V	A	D	M	V	D	M	F	V	L	L	L	P	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	I	E	M	A	D	L	V	A	V	T	K	S	D	G	D	L	I	V	P	A	R	R	I	Q	A	E	Y	V	S	A	L	K	L	L	R	K	R	S	Q	V	W	K	P	K	V	I	R
Template Known Secondary structure							T	T	S	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S		S								S	T	T	S	S															T	T	S			S		S	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.																.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	A	E	T	G	L	N	V	D	T	I	A	A	I	V	R	K	H	L	P	E	A	T	H	H	F	P	E	D	Y	I	T	D	R	S	Q	R	F	M	A	S	E	I	I	R	E	K	L	M	R	F	L	G	A	E	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	S	A	R	S	G	E	G	I	S	E	M	W	D	K	M	K	D	F	Q	D	L	M	L	A	S	G	E	L	T	A	K	R	R	K	Q	Q	K	V	W	M	W	N	L	I	Q	E	S	V	L	E	H	F	R	T	H	P	T
Template Known Secondary structure				T	T	T		T	T																			S																													S
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions