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Job DescriptionP06616
Confidence97.99%DateThu Jan 5 10:59:16 GMT 2012
Rank286Aligned Residues155
% Identity21%Templatec2v3cC_
PDB info PDB header:signaling proteinChain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20......... 30......... 40..... .
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Query Sequence  MSIDKSYCGFIAIVGRPNVGKSTLLNKLL. . . . . . GQKISITSRK. . . . . . . . . . . . . . . . . . . . . . . AQTTRH. . . . . R
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Template Sequence  LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIV
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   93......100.........110.........120.........130.........140.........150.........160.........170..
 
   47..50.........60.........70.........80.........90.........100.........110.........120......
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Query Sequence  IVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKV
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Template Sequence  KEGMEKFKKADVLIIDTAG. . . RHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKL
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SGGGGGGTTS
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   173......180.........190. ........200.........210.........220.........230.........240.........
 
   127..130.........140.........150.........160.....
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Query Sequence  DNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTI
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Template Sequence  DGSAKGGGALSAVAE. . . . . TKAPIKFI. . GIGEGIDDL
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   250.........260.... .....270.. .......280.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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