Job Description P06616 Confidence 99.71% Date Thu Jan 5 10:59:16 GMT 2012 Rank 96 Aligned Residues 163 % Identity 12% Template c2q3fB_ PDB info PDB header:protein binding Chain: B: PDB Molecule:ras-related gtp-binding protein d; PDBTitle: x-ray crystal structure of putative human ras-related gtp2 binding d in complex with gmppnp Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		F	I	A	I	V	G	R	P	N	V	G	K	S	T	L	L	N	K	L	L	G	Q	K	I	S	I	T	S	R	K	A	Q	T	T	R	H	R	I	V	G	I	H	T	E	G	.	A	Y	Q	A	I	Y	V	D	T	P	G	L	H	M	E	E	K	R	A	I	N	R	L	M	N	K	A	A	S	S	S	I	G	D
Query Conservation																																															.
Alig confidence																																															.
Template Conservation
Template Sequence		R	I	L	L	X	G	L	R	R	S	G	K	S	S	I	Q	K	V	V	F	H	K	X	S	P	N	E	T	L	F	L	E	S	T	N	K	I	C	R	E	D	V	S	N	S	S	F	V	N	F	Q	I	W	D	F	P	G	Q	I	D	F	F	D	P	T	F	D	Y	E	X	I	F	R	G	T	G	A	L	I	F
Template Known Secondary structure								S	T	T	S	S										S				G	G	G	G	G	G						S									S	S											S				T	T		T	T									T
Template Predicted Secondary structure
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.											.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.
Query Sequence		V	E	L	V	I	F	V	V	E	G	T	R	W	T	P	D	D	E	M	V	L	N	K	L	R	E	G	K	A	P	V	I	L	A	V	N	K	V	D	N	V	Q	E	K	A	D	.	.	.	.	.	.	.	.	.	.	L	L	P	H	L	Q	F	L	A	S	Q	M	N	F	L	D	I	V	P	I	S	A	E	T
Query Conservation																																																.	.	.	.	.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	I	D	S	Q	D	D	Y	X	E	A	L	A	R	L	H	L	T	V	T	R	A	Y	K	V	N	T	D	I	N	F	E	V	F	I	H	K	V	D	G	L	S	D	D	H	K	I	E	T	Q	R	D	I	H	Q	R	A	N	D	D	L	A	D	A	G	L	E	K	I	H	L	S	F	Y	L	T	S	I	Y	D
Template Known Secondary structure					T	T	S																					T	T										T	T	S	S																							T	T		T	T	S									T	T	S
Template Predicted Secondary structure
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	N	V	D	T	I	A	A	I	V	R	K	H	L
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		H	.	S	I	F	E	A	F	S	K	V	V	Q	K	L
Template Known Secondary structure		S	.												T	T
Template Predicted Secondary structure			.
Template SS confidence
		205		.	.	.	.	210	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions