Job Description P06616 Confidence 99.55% Date Thu Jan 5 10:59:16 GMT 2012 Rank 218 Aligned Residues 156 % Identity 17% Template c2p5sB_ PDB info PDB header:signaling protein Chain: B: PDB Molecule:ras and ef-hand domain containing; PDBTitle: rab domain of human rasef in complex with gdp Resolution 2.15 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	G	F	I	A	I	V	G	R	P	N	V	G	K	S	T	L	L	N	K	L	L	G	Q	K	I	S	I	T	S	R	K	A	Q	T	T	R	H	R	I	V	G	I	H	T	E	G	A	Y	Q	A	I	Y	V	D	T	P	G	L	H	M	E	E	K	R	A	I	N	R	L	M	N	K	A	A	S	S	S	I	G
Query Conservation
Alig confidence																												.	.	.	.	.	.																													.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.																													.	.	.	.	.	.	.
Template Sequence		A	Y	K	I	V	L	A	G	D	A	A	V	G	K	S	S	F	L	M	R	L	C	K	N	E	F	.	.	.	.	.	.	R	G	V	D	F	Q	M	K	T	L	I	V	D	G	E	R	T	V	L	Q	L	W	D	T	A	G	Q	E	.	.	.	.	.	.	.	R	F	R	S	I	A	K	S	Y	F	R	K	A
Template Known Secondary structure									S	S	T	T	S	S											S			.	.	.	.	.	.													T	T											T	T		T	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																												.	.	.	.	.	.																													.	.	.	.	.	.	.
Template SS confidence
		541	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.							.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.								.	.	.	.	.	600	.	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.						.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																											.	.	.	.	.
Query SS confidence																																											.	.	.	.	.
Query Sequence		D	V	E	L	V	I	F	V	V	E	G	T	R	W	T	P	D	D	E	M	V	L	N	K	L	R	E	G	K	A	P	V	I	L	A	V	N	K	V	D	N	.	.	.	.	.	V	Q	E	K	A	D	L	L	P	H	L	Q	F	L	A	S	Q	M	N	F	L	D	I	V	P	I	S	A	E	T	G	L	N	V
Query Conservation																																											.	.	.	.	.
Alig confidence																																											.	.	.	.	.
Template Conservation
Template Sequence		D	G	V	L	L	L	Y	D	V	T	C	E	K	S	F	L	N	I	R	E	W	V	D	M	I	E	D	A	A	V	P	I	M	L	V	G	N	K	A	D	I	R	D	T	A	A	T	E	G	Q	K	C	V	P	G	H	F	G	E	K	L	A	M	T	Y	G	A	L	F	C	E	T	S	A	K	D	G	S	N	I
Template Known Secondary structure		S								T	T							T																						G	G	G							T	T																	T								T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		615	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	I	A	A	I	V	R	K	H	L	P	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	A	V	L	H	L	A	R	E	V	K	K	R
Template Known Secondary structure														T
Template Predicted Secondary structure
Template SS confidence
		698	.	700	.	.	.	.	.	.	.	.	.	710	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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