Return to main results Retrieve Phyre Job Id

Job DescriptionP06616
Confidence99.90%DateThu Jan 5 10:59:16 GMT 2012
Rank23Aligned Residues213
% Identity20%Templatec1zo1I_
PDB info PDB header:translation/rnaChain: I: PDB Molecule:translation initiation factor 2; PDBTitle: if2, if1, and trna fitted to cryo-em data of e. coli 70s2 initiation complex
Resolution13.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50.........60.........70.........80....
Predicted Secondary structure 

































Query SS confidence 















































































Query Sequence  KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS
Query Conservation 
   
 




 









 
 
 


 

    


            

   



                   
Alig confidence 






























.




























.........









Template Conservation    
 


 





 





  
       . 
  


  
    
      
 





.........
  
     
Template Sequence  EPRAPVVTIMGHVDHGKTSLLEYIRSTKVAS. GEAGGITQHIGAYHVETENGMITFLDTPG. . . . . . . . . HAAFTSMRAR
Template Known Secondary structure 





STTSSSSB.TTB





SS




TTSS





T.........TT

TTSB
S
Template Predicted Secondary structure 
















.







.........
Template SS confidence 















































































   224.....230.........240.........250.... .....260.........270.........280... ......290...
 
   85....90........ .100.........110.........120.........130. ........140.........150........
Predicted Secondary structure 








.














.....








Query SS confidence 













.
































. . . . .


























Query Sequence  SIGDVELVIFVVEG. TRWTPDDEMVLNKLREGKAPVILAVNKVDNVQE. . . . . KADLLPHLQFLASQMNFLDIVPISAET
Query Conservation                .                   
 








   .....                   

 


  
Alig confidence 













.
































.....


























Template Conservation 
    
 






  

  

 
 
       

 








       
   
 
     
  
    

 


 
Template Sequence  GAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKA
Template Known Secondary structure  SSBS
SSTTTBS
TTTTT


SSSSTT



TT








TT

SSS


TTT
Template Predicted Secondary structure 






























Template SS confidence 















































































   294.....300.........310.........320.........330.........340.........350.........360.........370...
 
   159160.........170.........180.........190.........200.........210.........220.........230........
Predicted Secondary structure 






























Query SS confidence 















































































Query Sequence  GLNVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVE
Query Conservation 
 


 
   
   
 
          

        





    
  



     
            
   
 
 
Alig confidence 


























...........................
















...





Template Conservation 



  

  
                ...........................    
 
     
 
 
...    
 
Template Sequence  GTGIDELLDAILLQAEVLELKAVRKGM. . . . . . . . . . . . . . . . . . . . . . . . . . . ASGAVIESFLDKGRGPV. . . ATVLVR
Template Known Secondary structure 
TT
TTTTTT


STTTS


SB...........................

SSSS...
Template Predicted Secondary structure 














...........................

...
Template SS confidence 















































































   374.....380.........390.........400 .........410....... ..420...
 
   239240.... .....250.......
Predicted Secondary structure 



...



Query SS confidence 





. . .












Query Sequence  REGQKK. . . MVIGNKGAKIKTI
Query Conservation    
 
 ...



  
  

 
Alig confidence 





...












Template Conservation   
 
  

 

 
    

  
Template Sequence  EGTLHKGDIVLCGFEYGRVRAM
Template Known Secondary structure  SB

TT
BSS
Template Predicted Secondary structure 








Template SS confidence 





















   424.....430.........440.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions