Job Description P06616 Confidence 99.91% Date Thu Jan 5 10:59:16 GMT 2012 Rank 21 Aligned Residues 170 % Identity 21% Template c1kk3A_ PDB info PDB header:translation Chain: A: PDB Molecule:eif2gamma; PDBTitle: structure of the wild-type large gamma subunit of2 initiation factor eif2 from pyrococcus abyssi complexed3 with gdp-mg2+ Resolution 1.90 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.																								.	.	.	60
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	K	S	Y	C	G	F	I	A	I	V	G	R	P	N	V	G	K	S	T	L	L	N	K	L	L	G	Q	K	I	S	I	T	S	R	K	A	Q	T	T	R	H	R	I	V	G	I	H	T	E	G	A	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	I	Y
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	R	Q	A	E	V	N	I	G	M	V	G	H	V	D	H	G	K	T	T	L	T	K	A	L	T	G	V	W	T	D	S	E	E	L	R	R	G	I	T	I	K	I	G	F	A	D	A	E	I	R	R	C	P	N	C	G	R	Y	S	T	S	P	V	C	P	Y	C	G	H	E	T	E	F	V	R	R	V	S	F
Template Known Secondary structure				S									S	S	T	T	S	S										T							T	T	S	S		S	S	S													T	T	T					S	S	S	B		T	T	T			B
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.				.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.
Query SS confidence																																												.	.	.
Query Sequence		V	D	T	P	G	L	H	M	E	E	K	R	A	I	N	R	L	M	N	K	A	A	S	S	S	I	G	D	V	E	L	V	I	F	V	V	E	G	T	R	W	T	.	.	.	P	D	D	E	M	V	L	N	K	L	R	E	G	K	A	P	V	I	L	A	V	N	K	V	D	N	V	Q	E	K	A	D	L	L	P
Query Conservation																																												.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.																													.	.	.																												.
Template Conservation							.	.	.	.	.	.	.	.	.																																																											.
Template Sequence		I	D	A	P	G	.	.	.	.	.	.	.	.	.	H	E	A	L	M	T	T	M	L	A	G	A	S	L	M	D	G	A	I	L	V	I	A	A	N	E	P	C	P	R	P	Q	T	R	E	H	L	M	A	L	Q	I	I	G	Q	K	N	I	I	I	A	Q	N	K	I	E	L	V	.	D	K	E	K	A	L	E
Template Known Secondary structure					S	S	.	.	.	.	.	.	.	.	.												G	G	G		S								T	T	S		S																T											G	G	G	S	.
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.																																																											.
Template SS confidence
		88	.	90	.	.										.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.
		138	.	140	.	.	.	.						.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure									.	.	.	.	.
Query SS confidence									.	.	.	.	.
Query Sequence		H	L	Q	F	L	A	S	.	.	.	.	.	Q	M	N	F	L	D	I	V	P	I	S	A	E	T	G	L	N	V	D	T	I	A	A	I	V	R	K	H	L	P	E	A	T	H	H	F	P	E	D
Query Conservation									.	.	.	.	.
Alig confidence									.	.	.	.	.
Template Conservation
Template Sequence		N	Y	R	Q	I	K	E	F	I	E	G	T	V	A	E	N	A	P	I	I	P	I	S	A	L	H	G	A	N	I	D	V	L	V	K	A	I	E	D	F	I	P	T	P	K	R	D	P	N	K	P
Template Known Secondary structure											T	T	S	T	T	T	T							B	T	T	T	T	B	T												S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions