Job Description P06616 Confidence 99.78% Date Thu Jan 5 10:59:16 GMT 2012 Rank 63 Aligned Residues 164 % Identity 24% Template c1jalA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ychf protein; PDBTitle: ychf protein (hi0393) Resolution 2.40 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.											.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	I	D	K	S	Y	C	G	F	I	A	I	V	G	R	P	N	V	G	K	S	T	L	L	N	K	L	L	G	Q	K	.	.	.	.	.	.	.	.	.	.	I	S	I	T	S	R	K	A	Q	T	T	R	H	R	I	V	G	I	H	T	E	G	A	Y	Q	A	I	Y	V	D	T	P	G	L	H	M	E	E
Query Conservation																																		.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.
Template Sequence		M	G	F	K	.	.	.	.	.	.	C	G	I	V	G	L	P	N	V	G	K	S	T	L	F	N	A	L	T	K	A	G	P	F	C	T	I	E	P	N	T	G	V	V	P	M	P	D	P	R	L	D	A	L	A	E	I	V	K	P	E	R	I	L	P	T	T	M	E	F	V	D	I	A	G	L	V	A	G	A
Template Known Secondary structure						.	.	.	.	.	.							T	T	S	S											T										S	S																			S														S			T	T
Template Predicted Secondary structure						.	.	.	.	.	.
Template SS confidence
		1	.	.	.							.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	R	A	I	N	R	L	M	N	K	A	A	S	S	S	I	G	D	V	E	L	V	I	F	V	V	E	G	T	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.
Template Sequence		S	.	.	K	G	E	G	L	G	N	K	F	L	A	N	I	R	E	T	D	A	I	G	H	V	V	R	C	F	E	N	I	D	P	L	D	D	I	D	T	I	N	T	E	L	A	L	A	D	L	D	S	C	E	R	A	I	Q	R	L	Q	K	R	A	K	G	G	D	K	E	A	K	F	E	L	S	V	M	E	K
Template Known Secondary structure			.	.			G	G	G	T									T		S									S																																				T	T	T
Template Predicted Secondary structure			.	.
Template SS confidence
		81			.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
																		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	T	P	D	D	E	M	V	L	N	K	L	R	E	G	K	A	P	V	I	L	A	V	N	K	V	D	N	V	Q	E	K	A	D	L	L	P	H	L	Q	F	L	A	S	Q	M	N	F	L	D	I	V	P	I	S	A	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																	.								.	.	.	.	.	.	.	.
Template Conservation																																																																		.
Template Sequence		I	L	P	V	L	E	N	A	G	M	I	R	S	V	G	L	D	K	E	E	L	Q	A	I	K	S	Y	N	F	L	T	L	K	P	T	M	Y	I	A	N	V	N	E	D	G	F	E	N	N	P	Y	L	D	R	V	R	E	I	A	A	K	E	G	A	.	V	V	V	P	V	C	A	A	I	E	S	E	I	A	E
Template Known Secondary structure								T	T			G	G	G	S											G	G	G			S	T	T	S										T	T		S	S	S														T	T		.													G	G	G
Template Predicted Secondary structure																																																																		.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
																157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	G	L	N	V	D	T	I	A	A	I	V	R	K	H	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	D	D	E	E	K	V	E	F	L	Q	D	L	G	I	E	E	P	G	L	N	R	V	I	R	A	G	Y	A	L	L
Template Known Secondary structure		S		S	S	T	T					T	T	S	S			S		T	T											T
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions