Job Description P75969 Confidence 99.97% Date Thu Jan 5 12:16:36 GMT 2012 Rank 5 Aligned Residues 266 % Identity 17% Template c2a3vA_ PDB info PDB header:recombination Chain: A: PDB Molecule:site-specific recombinase inti4; PDBTitle: structural basis for broad dna-specificity in integron2 recombination Resolution 2.80 Å

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		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Y	Q	A	I	Q	D	D	R	L	K	S	G	D	I	R	L	N	T	Y	K	Q	K	A	K	P	V	S	L	L	R	E	R	A	G	M	K	L	I	S	A	V	D	V	R	D	I	A	Q	L	L	D	E	Y	I	A	A	G	R	P	R	M	A	Q	V	V	R	S	V	L	I	D	V	F	K	E	A	Q	H	Y
Query Conservation
Alig confidence																																																											.	.
Template Conservation																																																											.	.
Template Sequence		Q	F	L	L	S	V	R	E	F	M	Q	T	R	Y	Y	A	K	K	T	I	E	A	Y	L	H	W	I	T	R	Y	I	H	F	H	N	K	K	H	P	S	L	M	G	D	K	E	V	E	E	F	L	T	Y	L	A	V	Q	.	.	G	K	V	A	T	K	T	Q	S	L	A	L	N	S	L	S	F	L	Y	K	E
Template Known Secondary structure														T	T																		T	T	S	S	S			G	G	G															T	T	.	.	T
Template Predicted Secondary structure																																																											.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60			.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.	.
Query SS confidence																																																																								.	.
Query Sequence		G	E	V	P	P	G	Y	N	P	A	L	A	T	K	Q	P	R	R	K	I	T	R	Q	R	L	S	L	E	E	W	K	K	I	F	D	I	A	D	A	T	H	R	Y	M	G	N	A	M	L	L	A	L	V	T	G	Q	R	L	G	D	I	S	R	M	K	F	S	D	I	W	.	.	D	D	H	L	H	V	I	Q
Query Conservation																																																																								.	.
Alig confidence																																	.	.	.																																					.	.
Template Conservation																																	.	.	.
Template Sequence		I	L	K	T	P	L	S	L	E	I	R	F	Q	R	S	Q	L	E	R	K	L	P	V	V	L	T	R	D	E	I	R	.	.	.	R	L	L	E	I	V	D	P	K	H	Q	L	P	I	K	L	L	Y	G	S	G	L	R	L	M	E	C	M	R	L	R	V	Q	D	I	D	F	D	Y	G	A	I	R	I	W	Q
Template Known Secondary structure		T	S	S					T	T																							.	.	.			T	T	S	S														S									T		B	G	G	G			T	T	T	T
Template Predicted Secondary structure																																	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.																															.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	K	T	G	S	K	I	A	I	P	L	S	L	R	L	N	A	I	N	W	S	L	R	D	V	V	A	R	C	R	D	Y	A	V	S	A	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	H	F	F	R	S	T	S	Q	A	E	R
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	K	G	G	K	N	R	T	V	T	L	A	K	E	L	Y	P	H	L	K	E	Q	I	A	L	A	K	R	Y	Y	D	R	D	L	H	Q	K	N	Y	G	G	V	W	L	P	T	A	L	K	E	K	Y	P	N	A	P	Y	E	F	R	W	H	Y	L	F	P	S	F	Q	L	S	L	D	P	E	S	D	V	M	R
Template Known Secondary structure			T	T	T									G	G	G																			T	S		T	T	B			S			S	T	T		T	T	T	S	T	T	G	G	G		G	G	G	S	B	S	S	B		S	S					T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.				.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure																																																			.	.	.
Query SS confidence																																																			.	.	.
Query Sequence		G	A	Q	V	K	A	N	T	L	T	M	N	F	S	K	A	R	D	L	A	R	I	D	W	G	E	G	S	P	A	T	F	H	E	Q	R	S	L	S	E	R	L	Y	K	E	Q	G	L	D	.	.	.	T	Q	K	L	L	G	H	K	T	Q	Q	Q	T	D	R	Y	H	D
Query Conservation																																																			.	.	.
Alig confidence																									.	.	.	.																							.	.	.
Template Conservation																									.	.	.	.
Template Sequence		R	H	H	M	N	E	T	V	L	Q	K	A	V	R	R	S	A	Q	E	A	G	I	E	.	.	.	.	K	T	V	T	C	H	T	L	R	H	S	F	A	T	H	L	L	E	V	G	A	D	I	R	T	V	Q	E	Q	L	G	H	T	D	V	K	T	T	Q	I	Y	T	H
Template Known Secondary structure				B																T	T				.	.	.	.	S																		T	T											T		S	S					G	G	G
Template Predicted Secondary structure																									.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.					.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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