Job Description P75969 Confidence 100.00% Date Thu Jan 5 12:16:36 GMT 2012 Rank 1 Aligned Residues 344 % Identity 33% Template c1z1bA_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:integrase; PDBTitle: crystal structure of a lambda integrase dimer bound to a2 coc' core site Resolution 3.80 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	N	V	S	V	P	N	L	Y	P	L	Y	S	R	K	V	N	K	V	Y	W	R	Y	K	H	P	V	T	G	K	F	H	A	L	G	T	N	E	A	E	A	I	A	I	A	T	E	A	N	T	R	L	A	E	Q	R	T	R	Q	I	L	A	I	S	D	R	I	A	T	S	K	G	K	A	I	T	T	S	T
Query Conservation
Alig confidence														.	.	.	.	.																																																			.	.	.	.
Template Conservation														.	.	.	.	.																																																			.	.	.	.
Template Sequence		E	R	R	D	L	P	P	N	L	Y	I	R	.	.	.	.	.	N	N	G	Y	Y	C	Y	R	D	P	R	T	G	K	E	F	G	L	G	R	D	R	R	I	A	I	T	E	A	I	Q	A	N	I	E	L	F	S	G	H	K	H	K	P	L	T	A	R	I	N	.	.	.	.	S	D	N	S	V	T	L	H	S
Template Known Secondary structure								T	T					.	.	.	.	.	T	T	T							T	T	T								S																															.	.	.	.				S		B
Template Predicted Secondary structure														.	.	.	.	.																																																			.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.						20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.					70	.	.	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	D	R	Y	Q	A	I	Q	D	D	R	L	K	S	G	D	I	R	L	N	T	Y	K	Q	K	A	K	P	V	S	L	L	R	E	R	A	G	M	K	L	I	S	A	V	D	V	R	D	I	A	Q	L	L	D	E	Y	I	A	A	G	R	P	R	M	A	Q	V	V	R	S	V	L	I	D	V	F	K	E	A
Query Conservation
Alig confidence												.	.	.	.
Template Conservation												.	.	.	.
Template Sequence		W	L	D	R	Y	E	K	I	L	A	.	.	.	.	S	R	G	I	K	Q	K	T	L	I	N	Y	M	S	K	I	K	A	I	R	R	G	L	P	D	A	P	L	E	D	I	T	T	K	E	I	A	A	M	L	N	G	Y	I	D	E	G	K	A	A	S	A	K	L	I	R	S	T	L	S	D	A	F	R	E	A
Template Known Secondary structure												.	.	.	.	T	T	T																				S		S		B	G	G	G																T	T
Template Predicted Secondary structure												.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.					.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	H	Y	G	E	V	P	P	G	Y	N	P	A	L	A	T	K	Q	P	R	R	K	I	T	R	Q	R	L	S	L	E	E	W	K	K	I	F	D	I	A	D	A	T	H	R	Y	M	G	N	A	M	L	L	A	L	V	T	G	Q	R	L	G	D	I	S	R	M	K	F	S	D	I	W	D	D	H	L	H	V	I
Query Conservation
Alig confidence																			.	.
Template Conservation																			.	.
Template Sequence		I	A	E	G	H	I	T	T	N	H	V	A	A	T	R	A	A	.	.	K	S	K	V	R	R	S	R	L	T	A	D	E	Y	L	K	I	Y	Q	A	A	E	S	S	P	C	W	L	R	L	A	M	E	L	A	V	V	T	G	Q	R	V	G	D	L	C	E	M	K	W	S	D	I	V	D	G	Y	L	Y	V	E
Template Known Secondary structure				T	T	S		S	S		T	T	T	T	S				.	.						B															T	T	S	S																						T	T		B	G	G	G			T	T
Template Predicted Secondary structure																			.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	K	T	G	S	K	I	A	I	P	L	S	L	R	L	N	A	I	N	W	S	L	R	D	V	V	A	R	C	R	D	Y	A	V	S	A	Y	L	V	H	F	F	R	S	T	S	Q	A	E	R	G	A	Q	V	K	A	N	T	L	T	M	N	F	S	K	A	R	D	L	A	R	I	D	W	G	E	G	S	P
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.																																						.
Template Conservation																																			.	.	.	.	.	.	.																																						.
Template Sequence		Q	S	K	T	G	V	K	I	A	I	P	T	A	L	H	I	D	A	L	G	I	S	M	K	E	T	L	D	K	C	K	E	I	.	.	.	.	.	.	.	L	G	G	E	T	I	I	A	S	T	R	R	E	P	L	S	S	G	T	V	S	R	Y	F	M	R	A	R	K	A	S	G	L	S	F	E	G	.	D	P
Template Known Secondary structure			T	T	T								T	T				T	T	T	T														.	.	.	.	.	.	.	T		S	S	B	S	S			T	T	S																				T				S	S	.	B
Template Predicted Secondary structure																																			.	.	.	.	.	.	.																																						.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.								.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.		.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.				.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure																						.	.	.
Query SS confidence																						.	.	.
Query Sequence		A	T	F	H	E	Q	R	S	L	S	E	R	L	Y	K	E	Q	G	L	D	.	.	.	T	Q	K	L	L	G	H	K	T	Q	Q	Q	T	D	R	Y	H	D	D	R	G	K	G	W	S	K	V	A	L
Query Conservation																						.	.	.
Alig confidence										.												.	.	.																			.
Template Conservation										.																																	.
Template Sequence		P	T	F	H	E	L	R	S	.	L	S	A	R	L	Y	E	K	Q	I	S	D	K	F	A	Q	H	L	L	G	H	K	S	D	T	M	A	S	Q	R	D	D	.	R	G	R	E	W	D	K	I	E	I
Template Known Secondary structure				T	T					.										T										T		S	S					T					.	T	T	S
Template Predicted Secondary structure										.																																	.
Template SS confidence
		305	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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