Job Description P75969 Confidence 100.00% Date Thu Jan 5 12:16:36 GMT 2012 Rank 3 Aligned Residues 289 % Identity 12% Template c1ma7A_ PDB info PDB header:hydrolase, ligase/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: crystal structure of cre site-specific recombinase2 complexed with a mutant dna substrate, loxp-a8/t27 Resolution 2.30 Å

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		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.																								.
Query SS confidence																																												.	.																								.
Query Sequence		T	T	S	T	W	L	D	R	Y	Q	A	I	Q	D	D	R	L	K	S	G	D	I	R	L	N	T	Y	K	Q	K	A	K	P	V	S	L	L	R	E	R	A	G	.	.	M	K	L	I	S	A	V	D	V	R	D	I	A	Q	L	L	D	E	Y	I	A	A	G	.	R	P	R	M	A	Q	V	V	R	S	V	L
Query Conservation																																												.	.																								.
Alig confidence																		.	.	.																								.	.																								.
Template Conservation																		.	.	.
Template Sequence		T	S	D	E	V	R	K	N	L	M	D	M	F	R	D	R	.	.	.	Q	A	F	S	E	H	T	W	K	M	L	L	S	V	C	R	S	W	A	A	W	C	K	L	N	N	R	K	W	F	P	A	E	P	E	D	V	R	D	Y	L	L	Y	L	Q	A	R	G	L	A	V	K	T	I	Q	Q	H	L	G	Q	L
Template Known Secondary structure																T	G	.	.	.	G	G	S																						T	T				S	S															T	T	T
Template Predicted Secondary structure																		.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.				.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180								.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.					.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.																																				.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.																																				.	.	.	.
Query Sequence		I	D	V	F	K	E	A	Q	H	Y	G	E	V	P	P	G	Y	N	P	A	L	.	.	.	.	.	.	.	A	T	K	Q	P	R	R	K	I	T	R	Q	R	L	S	L	E	E	W	K	K	I	F	D	I	A	D	A	T	H	R	Y	M	G	N	.	.	.	.	A	M	L	L	A	L	V	T	G	Q	R	L	G
Query Conservation																							.	.	.	.	.	.	.																																				.	.	.	.
Alig confidence																							.	.	.	.	.	.	.																																				.	.	.	.
Template Conservation
Template Sequence		N	M	L	H	R	R	S	G	L	P	R	P	S	D	S	N	A	V	S	L	V	M	R	R	I	R	K	E	N	V	D	A	G	E	R	A	K	Q	A	L	A	F	E	R	T	D	F	D	Q	V	R	S	L	M	E	N	S	D	R	C	Q	D	I	R	N	L	A	F	L	G	I	A	Y	N	T	L	L	R	I	A
Template Known Secondary structure							T	T	T	S			G	G	G	S																T	T	T																						T	T																							S
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.									.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																					.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.
Query Sequence		D	I	S	R	M	K	F	S	D	I	W	D	D	H	L	H	V	I	Q	.	.	.	.	.	.	.	.	E	K	T	G	S	K	I	A	I	P	L	S	L	R	L	N	A	I	N	W	S	L	R	D	V	V	A	R	C	R	D	Y	A	V	S	A	Y	L	V	H	F	F	R	S	T	S	Q	A	E	R	G	A	Q
Query Conservation																					.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	I	A	R	I	R	V	K	D	I	S	R	T	D	G	G	R	M	L	I	H	I	G	R	T	K	T	L	V	S	T	A	G	V	E	K	A	L	S	L	G	V	T	K	L	V	E	R	W	I	S	V	S	G	V	A	D	D	P	N	N	Y	L	F	C	R	V	R	K	N	G	V	A	A	P	S	A	T	S	Q
Template Known Secondary structure					S		B	S	S	S			S	T	T	T	T	S										S	S	S	S		S								T	T															S	S	S	T	T	S	B	S				B		T	T	S		B				S	S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.					.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.				.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure																									.	.	.	.																								.	.	.
Query SS confidence																									.	.	.	.																								.	.	.
Query Sequence		V	K	A	N	T	L	T	M	N	F	S	K	A	R	D	L	A	R	I	D	W	G	E	.	.	.	.	G	S	P	A	T	F	H	E	Q	R	S	L	S	E	R	L	Y	K	E	Q	G	L	D	.	.	.	T	Q	K	L	L	G	H	K	T	Q	Q	Q	T	D	R	Y	H	D	D	R	G	K	G	W	S	K	V
Query Conservation																									.	.	.	.																								.	.	.
Alig confidence																									.	.	.	.																								.	.	.
Template Conservation
Template Sequence		L	S	T	R	A	L	E	G	I	F	E	A	T	H	R	L	I	Y	G	A	K	D	D	S	G	Q	R	Y	L	A	W	S	G	H	S	A	R	V	G	A	A	R	D	M	A	R	A	G	V	S	I	P	E	I	M	Q	A	G	G	W	T	N	V	N	I	V	M	N	Y	I	R	N	L	D	S	E	T	G	A	M
Template Known Secondary structure																			T		S				S	S		S		S	S			T	T													T	T											T		S		S								T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		374
Predicted Secondary structure
Query SS confidence
Query Sequence		A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		336

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions