Job Description P75969 Confidence 77.19% Date Thu Jan 5 12:16:36 GMT 2012 Rank 35 Aligned Residues 119 % Identity 16% Template c1a31A_ PDB info PDB header:isomerase/dna Chain: A: PDB Molecule:protein (topoisomerase i); PDBTitle: human reconstituted dna topoisomerase i in covalent complex2 with a 22 base pair dna duplex Resolution 2.10 Å

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		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.													230	.	.	.	.	.	.	.	.	.	240									.	.	.	.	.	.		.	.	.	250	.	.			.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.							.							.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.							.							.	.
Query Sequence		E	E	W	K	K	I	F	D	I	A	D	A	T	H	R	Y	M	G	N	A	M	L	L	A	L	V	T	G	Q	R	L	G	D	.	.	.	.	.	.	.	.	.	.	.	.	I	S	R	M	K	F	S	D	I	W	D	.	.	.	.	.	.	.	.	D	H	L	H	V	I	.	Q	E	K	T	G	S	.	.	K
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.							.							.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.							.							.	.
Template Conservation
Template Sequence		N	Q	Y	R	E	D	W	K	S	K	E	M	K	V	R	Q	R	A	V	A	L	Y	F	I	D	K	L	A	L	R	A	G	N	E	K	E	E	G	E	T	A	D	T	V	G	C	C	S	L	R	V	E	H	I	N	L	H	P	E	L	D	G	Q	E	Y	V	V	E	F	D	F	L	G	K	D	S	I	R	Y	Y
Template Known Secondary structure								T	T		S																											T	T	T	S						G	G	G		B	G	G	G								T	T												G	G	G
Template Predicted Secondary structure
Template SS confidence
		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	I	P	L	S	L	R	L	N	A	I	N	W	S	L	R	D	V	V	A	R	C	R	D	Y	A	V	S	A	Y	L	V	H	F	F	R	S	T	S	Q	A	E	R	G	A	Q	V	K	A	N	T	L	T	M	N	F	S	K	A	R	D	L	A	R	I	D	W	G	E	G	S	P	A	T	F	H	E	Q	R
Query Conservation
Alig confidence																				.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template Sequence		N	K	V	P	V	E	K	R	V	F	K	N	L	Q	L	F	M	E	.	.	.	.	.	.	N	K	Q	P	E	D	D	L	F	.	.	.	.	.	.	.	.	.	.	.	.	D	R	L	N	T	G	I	L	N	K	H	L	Q	D	L	M	E	G	.	.	.	.	.	.	.	.	.	.	L	T	A	K	V	F	R
Template Known Secondary structure																	T	T	T	.	.	.	.	.	.	T			T	T	S	B	T	T	.	.	.	.	.	.	.	.	.	.	.	.	T	T														S	T	T	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		539	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.							.	.	.	560	.	.	.	.	.													.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.											.	.	.	.	.	.	590
		334	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	S	E	R	L	Y	K	E	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	Y	N	A	S	I	T	L	Q	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		591	.	.	.	.	.	.	.	.	600

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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