Job Description P0C0L7 Confidence 99.95% Date Thu Jan 5 11:29:54 GMT 2012 Rank 5 Aligned Residues 401 % Identity 9% Template c2xutC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter. Resolution 3.62 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		I	T	A	A	S	L	G	N	A	M	E	W	F	D	F	G	V	Y	G	F	V	A	Y	A	L	G	K	V	F	F	P	G	A	D	P	S	V	Q	M	V	A	A	L	A	T	F	S	V	P	F	L	I	R	P	L	G	G	L	F	F	G	M	L	G	D	K	Y	.	G	R	Q	K	I	L	A	I	T	I	V	I
Query Conservation																																																																					.
Alig confidence															.	.																																																					.
Template Conservation															.	.
Template Sequence		I	I	A	S	E	A	C	E	R	F	S	F	Y	.	.	G	M	R	N	I	L	T	P	F	L	M	T	A	L	L	L	S	I	P	E	E	L	R	G	A	V	A	K	D	V	F	H	S	F	V	I	G	V	Y	F	F	P	L	L	G	G	W	I	A	D	R	F	F	G	K	Y	N	T	I	L	W	L	S	L	I
Template Known Secondary structure															.	.													S		S	S			S	S	S	T	T	T	T	T															T									T	T	S	S		S
Template Predicted Secondary structure															.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	I	S	T	F	C	I	G	L	I	P	S	Y	D	T	I	G	I	W	A	P	I	L	L	L	I	C	K	M	A	Q	G	F	S	V	G	G	E	Y	T	G	A	S	I	F	V	A	E	Y	S	P	D	R	K	R	G	F	M	G	S	W	L	D	F	G	S	I	A	G	F	V	L	G	A	G	V	V	V	L
Query Conservation
Alig confidence																		.	.	.	.	.	.	.																																										.
Template Conservation																		.	.	.	.	.	.	.																																										.
Template Sequence		Y	C	V	G	H	A	F	L	A	I	F	E	H	S	V	Q	.	.	.	.	.	.	.	G	F	Y	T	G	L	F	L	I	A	L	G	S	G	G	I	K	P	L	V	S	S	F	M	G	D	Q	F	D	Q	S	N	K	S	L	A	Q	K	A	F	D	.	M	F	Y	F	T	I	N	F	G	S	F	F	A	S	L
Template Known Secondary structure												T	S	S				.	.	.	.	.	.	.															T	T											T		S	T	T	T	T	T								.
Template Predicted Secondary structure																		.	.	.	.	.	.	.																																										.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110								.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.	.
Query Sequence		I	S	T	I	V	G	E	A	N	F	L	D	W	G	W	R	I	P	F	F	I	A	L	P	L	G	I	I	G	L	Y	L	R	H	A	L	E	E	T	P	A	F	Q	Q	H	V	D	K	L	E	Q	G	D	R	E	G	L	Q	D	G	P	K	V	S	F	K	E	I	A	T	K	Y	.	.	.	.	.	.	.	.
Query Conservation																																																																										.	.	.	.	.	.	.	.
Alig confidence																																																																										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	M	P	L	L	L	K	N	F	G	A	A	V	A	F	G	I	P	G	V	L	M	F	V	A	T	V	F	F	W	L	G	R	K	R	Y	I	H	M	P	V	E	G	K	G	N	I	G	L	V	L	A	L	I	G	G	V	S	A	A	Y	A	L	V	N	I	P	T	L	G	I	V	A	G	L	C	C	A	M	V
Template Known Secondary structure		T	S	T					T	S																						S	S	S	S	S							T	T																			T	G	G	G	T	T	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
																													258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	R	S	L	L	T	C	I	G	L	V	I	A	T	N	V	T	Y	Y	M	L	L	T	Y	M	P	S	Y	L	S	H	N	L	H	Y	S	E	D	H	G	V	L	I	I	I	A	I	M	I	G	M	L	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	V	M	G	F	V	G	A	G	A	S	L	Q	L	E	R	A	R	K	S	H	P	D	A	A	V	D	G	V	R	S	V	L	R	I	L	V	L	F	A	L	V	T	P	F	W	S	L	F	D	Q	K	A	S	T	W	I	L	Q	A	N	D	M	V	K	P	Q	W	F	E	P	A	M	M	Q	A	L	N	P	L
Template Known Secondary structure									T	G	G	G	T					S			S			S	S	S	S	T	T	T	T	T									T	T	S					T	T	T	S	S	T	T	T									S				S	S	S							T	T	S	G	G
Template Predicted Secondary structure
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.							.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.
Query Sequence		V	Q	P	V	M	G	L	L	S	D	R	F	G	R	R	P	F	V	L	L	G	S	V	A	L	F	V	L	A	I	P	A	F	I	L	.	.	.	.	.	.	I	N	S	N	V	I	G	L	I	F	A	G	L	L	M	L	A	V	I	L	N	C	F	T	G	V	M	A	S	T	L	P	A	M	F	P	T	H	I
Query Conservation																																					.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.
Template Conservation
Template Sequence		L	V	M	L	L	I	P	F	N	N	F	V	T	A	L	R	K	M	G	A	G	I	A	I	T	G	L	S	W	I	V	V	G	T	I	Q	L	M	M	D	G	G	S	A	L	S	I	F	W	Q	I	L	P	Y	A	L	L	T	F	G	E	V	L	V	S	A	T	G	L	E	F	A	Y	S	Q	A	P	K	A	M
Template Known Secondary structure		G					G	G	G	T	T	T									T											T	T	T	T	T	T	T	T	T	T	T	T					S																						T	T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Y	S	A	L	A	A	A	F	N	I	S	V	L	V	A	G	L	T	P	T	L	A	A	W	L	V	E	S	S	Q	N	L	M	M	P	A	Y	Y	L	M	V	V	A	V	V	G	L	I	T	G	V	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	G	T	I	M	S	F	W	T	L	S	V	T	V	G	N	L	W	V	L	L	A	N	V	S	V	K	S	P	T	V	T	E	Q	I	V	Q	T	G	M	S	V	T	A	F	Q	M	F	F	F	A	G	F
Template Known Secondary structure			T	T	T					G	G	G															T	T	S												S
Template Predicted Secondary structure
Template SS confidence
		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.