Job Description P0ACB4 Confidence 27.87% Date Thu Jan 5 11:17:49 GMT 2012 Rank 271 Aligned Residues 79 % Identity 16% Template c1kgsA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:dna binding response regulator d; PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima Resolution 1.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		M	K	T	L	I	L	F	S	T	R	D	G	Q	T	R	E	I	A	S	Y	L	A	S	E	L	K	E	L	G	I	Q	A	D	V	A	N	V	H	R	.	.	I	E	E	P	Q	W	E	N	Y	D	R	V	V	I	G	A	S	I	R	Y	G	H	Y	H	S	A	F	Q	E	F	V	K	K	H	A	T	R	L	N
Query Conservation																																									.	.
Alig confidence								.	.	.	.	.																													.	.																							.	.	.	.
Template Conservation								.	.	.	.	.																																																					.	.	.	.
Template Sequence		V	R	V	L	V	V	.	.	.	.	.	E	D	E	R	D	L	A	D	L	I	T	E	A	L	K	K	E	X	F	T	V	D	V	C	Y	D	G	E	E	G	X	Y	X	A	L	N	E	P	F	D	V	V	I	L	D	I	X	L	P	V	H	D	.	.	.	.	G	W	E	I	L	K	S	X	R	E	S	G	V
Template Known Secondary structure								.	.	.	.	.		S	S														T	T							S	S											S			S						S			S	S	S		.	.	.	.											T	T
Template Predicted Secondary structure								.	.	.	.	.																																																					.	.	.	.
Template SS confidence
		3	.	.	.	.	.						.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60					.	.	.	.	.	.	.	.	.	70	.	.	.
		79	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	M	P	S	A	F	Y	S	V	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	T	P	V	L	X	L	T	A	L
Template Known Secondary structure										S	S
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions