 |
Job Description | P54901 | Confidence | 92.31% | Date | Thu Jan 5 12:06:05 GMT 2012 |
Rank | 85 | Aligned Residues | 72 |
% Identity | 15% | Template | d1p2fa1 |
SCOP info | DNA/RNA-binding 3-helical bundle
| C-terminal effector domain of the bipartite response regulators
| PhoB-like
|
Resolution | 1.80 |
|
 |
  |   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | |
|
|
. | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | |
|
. | . | . | . | 70 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  | . | . |  |  |  |  |
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | P | P | S | V | L | S | A | P | Q | R | R | C | Q | I | L | L | T | L | F | Q | P | G | L | T | A | T | M | A | T | F | S | E | L | N | . |
. |
. |
G | V | D | D | D | I | A | S | L | D | I | S | E | T | G | R | E | I | L | R | Y | H | Q | L | T | . |
. |
L | T | T | G | Y | D | G | S | Y | R | V | E | G |
Query Conservation |   |
  |   |   |   |   |   |
|   |   |
|
|   |   |   |
|
|   |   |
|
|   |   |   |   |   |   |
|
|   |   |
|
|   |   |
| . | . | . |   |
|
|   |
|
|
|   |   |
|
|
|   |
|   |   |   |
|   |   |   |   |   |
|   | . | . |
|   |   |   |   |   |   |
|   |   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |
|
|   |   |
|   |   |
|
|   |   |
|   |   |   | . |   |   |   |   |
|
|   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |
|   |
|
|   |
|   |
|
|   |
|   |
|
Template Sequence |   |
G | K | R | I | H | L | P | K | K | E | F | E | I | L | L | F | L | A | E | N | . |
A | G | K | V | V | T | R | E | K | L | L | E | T | F | W | E | D | P | V | S | P | R | V | V | D | T | V | I | K | R | I | R | K | A | I | E | D | D | P | N | R | P | R | Y | I | K | T | I | W | G | V | G | Y | X | F | T | G |
Template Known Secondary structure |   |
T |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | . | T | T | S |
|  |  |  |  |  |  |  |  |  |  |
| S | S |
|
|
| T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| S | S | T | T | S |
| S | S |  |  |  |  | T | T | T |  |  |  |  |
|
|
Template Predicted Secondary structure |   |
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
141 | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | |
. | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|