Job Description P54901 Confidence 100.00% Date Thu Jan 5 12:06:05 GMT 2012 Rank 1 Aligned Residues 375 % Identity 13% Template c3sqnB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:conserved domain protein; PDBTitle: putative mga family transcriptional regulator from enterococcus2 faecalis Resolution 2.31 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	Q	R	R	C	Q	I	L	L	T	L	F	Q	P	G	L	T	A	T	M	A	T	F	S	E	L	N	G	V	D	D	D	I	A	S	L	D	I	S	E	T	G	R	E	I	L	R	Y	H	Q	L	T	L	T	T	G	Y	D	G	S	Y	R	V	E	G	T	V	L	N	Q	R	L	C	L	F	H	W	L	R
Query Conservation
Alig confidence																															.	.	.																	.							.
Template Conservation																															.	.	.																	.							.
Template Sequence		P	Q	S	I	S	I	Q	L	L	K	E	L	L	F	T	K	E	L	V	T	T	S	F	L	S	T	S	G	Y	.	.	.	E	T	L	K	R	H	I	K	K	X	N	Q	A	L	R	D	.	F	H	L	T	I	Q	.	L	T	T	X	T	I	Q	L	I	G	A	E	S	N	I	R	I	F	Y	H	R	L	L	V
Template Known Secondary structure																	S														.	.	.																T	.	T	T					.			S	S						S														G
Template Predicted Secondary structure																															.	.	.																	.							.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.				.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	F	R	L	C	P	S	F	I	T	S	Q	F	T	P	A	L	K	S	E	L	K	R	R	G	I	A	R	N	F	Y	D	D	T	N	L	Q	A	L	V	N	L	C	S	R	R	L	Q	K	R	F	E	S	R	D	I	H	F	L	C	L	Y	L	Q	Y	C	L	L	Q	H	H	A	G	I	T	P	Q	F	N
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	F	T	H	N	N	Y	F	F	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	S	I	H	E	E	H	Y	F	Q	F	L	K	Q	V	Y	S	S	E	L	T	V	E	T	E	E	I	F	G	A	C	W	F	F	I	N	T	I	R	N	K	A	N	C	R	V	S	Q	F
Template Known Secondary structure		G	G	G	G		T	T	T	S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	T	T	T	T				B																		T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.																					.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	Q	R	R	W	A	E	S	C	L	E	F	Q	V	A	Q	E	I	G	R	H	W	Q	R	R	A	L	Q	P	V	P	P	D	E	P	L	F	M	A	L	L	F	S	M	L	R	V	P	D	P	L	R	D	A	H	Q	R	D	R	Q	L	R	Q	S	I	K	R	L	V	N	H	F	R	E	L	G	N	V	R
Query Conservation
Alig confidence									.	.	.	.																																											.
Template Conservation									.	.	.	.																																											.
Template Sequence		S	F	D	S	K	D	V	.	.	.	.	L	F	Q	L	Y	Q	P	S	L	A	K	L	Y	A	S	E	G	I	Y	L	Q	G	E	E	S	F	F	A	F	F	C	F	L	E	S	W	N	Y	D	N	V	Y	.	G	E	T	L	A	S	A	L	H	T	H	Y	S	Q	L	R	K	S	L	Q	Q	F	V	T	N	L
Template Known Secondary structure					T	T			.	.	.	.															T	T	T					T													T	B		S	S				.
Template Predicted Secondary structure									.	.	.	.																																											.
Template SS confidence
		226	.	.	.	230	.	.					.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		F	Y	D	E	Q	G	L	C	D	Q	L	Y	T	H	L	A	Q	A	L	N	R	S	L	F	A	I	G	I	D	N	T	L	P	E	E	F	A	R	L	Y	P	R	L	V	R	T	T	.	R	A	A	L	A	G	F	E	S	E	Y	G	V	H	L	S	D	E	E	S	G	L	V	A	V	I	F	G	A	W	L	M
Query Conservation																																																	.
Alig confidence																																																	.
Template Conservation
Template Sequence		S	T	E	E	D	L	I	Q	T	N	L	L	D	N	L	L	L	L	F	I	K	Y	T	E	S	P	T	L	S	E	Q	F	Q	L	E	Y	Q	E	L	X	T	E	Q	L	S	K	S	N	Q	E	L	L	E	I	L	S	R	Y	T	T	I	E	E	P	T	Y	F	L	S	L	A	S	L	L	E	K	Q	A	I	Y
Template Known Secondary structure							G	G	G	S	S																							G	G	G	G									T	T	T										T	T	S			S	S
Template Predicted Secondary structure
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	N	D	L	H	E	K	Q	I	I	L	L	T	G	N	D	S	E	R	E	A	Q	I	E	Q	Q	L	R	E	L	T	L	L	P	L	N	I	K	H	M	S	V	K	A	F	L	Q	T	G	A	P	R	G	A	A	L	I	I	A	P	Y	T	M	P	L	P	L	F	S	P	P	L	I	Y	T	D	L	T	L
Query Conservation
Alig confidence						.																																									.																				.	.	.	.
Template Conservation						.																																									.																				.	.	.	.
Template Sequence		S	I	Q	A	.	Q	T	X	T	A	Y	F	L	F	Q	G	E	P	A	W	K	A	F	L	Q	Q	E	L	A	A	Y	L	G	T	R	V	K	L	Q	A	I	E	Y	V	E	.	L	S	Q	L	T	L	N	E	A	D	I	I	I	S	N	F	P	H	L	.	.	.	.	D	L	P	V	F	Y	L	S	L	I	P
Template Known Secondary structure		T	T			.		S									S																		T	T								G	G	G	.	G	T	T					T	T						S					.	.	.	.	S	S							S	S
Template Predicted Secondary structure						.																																									.																				.	.	.	.
Template SS confidence
		390	.	.	.		.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.		.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.					.	.	.	.	.	.	.	460	.	.	.
		412	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	H	Q	Q	E	Q	I	R	K	M	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	K	N	E	L	R	R	L	A	E	L	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		466	.	.	.	470	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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