Email l.a.kelley@imperial.ac.uk Description P0A6X3 Date Thu Jan 5 11:04:09 GMT 2012 Unique Job ID 7e5497423abd56be

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3qhsD_ 100.0 100 PDB header:rna binding protein Chain: D: PDB Molecule:protein hfq; PDBTitle: crystal structure of full-length hfq from escherichia coli 2 d1u1sa1 100.0 92 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Pleiotropic translational regulator Hfq 3 d1hk9a_ 100.0 100 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Pleiotropic translational regulator Hfq 4 c3hsbB_ 100.0 45 PDB header:rna binding protein/rna Chain: B: PDB Molecule:protein hfq; PDBTitle: crystal structure of ymah (hfq) from bacillus subtilis in complex with2 an rna aptamer 5 c1kq1W_ 100.0 32 PDB header:translation Chain: W: PDB Molecule:host factor for q beta; PDBTitle: 1.55 a crystal structure of the pleiotropic translational2 regulator, hfq 6 d1kq1a_ 100.0 33 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Pleiotropic translational regulator Hfq 7 c2qtxL_ 97.4 30 PDB header:rna binding protein Chain: L: PDB Molecule:uncharacterized protein mj1435; PDBTitle: crystal structure of an hfq-like protein from methanococcus2 jannaschii 8 c3hfoC_ 96.8 29 PDB header:rna binding protein Chain: C: PDB Molecule:ssr3341 protein; PDBTitle: crystal structure of an hfq protein from synechocystis sp. 9 c3hfnA_ 96.5 26 PDB header:rna binding protein Chain: A: PDB Molecule:asl2047 protein; PDBTitle: crystal structure of an hfq protein from anabaena sp. 10 d1b34b_ 96.0 26 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 11 c1b34B_ 96.0 26 PDB header:rna binding protein Chain: B: PDB Molecule:protein (small nuclear ribonucleoprotein sm d2); PDBTitle: crystal structure of the d1d2 sub-complex from the human snrnp core2 domain 12 c3cw1W_ 92.3 29 PDB header:splicing Chain: W: PDB Molecule:small nuclear ribonucleoprotein e; PDBTitle: crystal structure of human spliceosomal u1 snrnp 13 c2x4jA_ 91.2 29 PDB header:viral protein Chain: A: PDB Molecule:hypothetical protein orf137; PDBTitle: crystal structure of orf137 from pyrobaculum spherical2 virus 14 d1th7a1 91.0 22 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 15 d1h641_ 90.8 16 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 16 c2fwkB_ 90.6 10 PDB header:dna binding protein Chain: B: PDB Molecule:u6 snrna-associated sm-like protein lsm5; PDBTitle: crystal structure of cryptosporidium parvum u6 snrna-associated sm-2 like protein lsm5 17 c3swnA_ 90.4 13 PDB header:rna binding protein Chain: A: PDB Molecule:u6 snrna-associated sm-like protein lsm5; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings 18 d1d3ba_ 90.0 16 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 19 d1jbma_ 89.8 26 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 20 d1i4k1_ 89.6 25 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 21 d1ljoa_ not modelled 88.9 13 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 22 c3cw1Z_ not modelled 88.0 38 PDB header:splicing Chain: Z: PDB Molecule:small nuclear ribonucleoprotein f; PDBTitle: crystal structure of human spliceosomal u1 snrnp 23 d1mgqa_ not modelled 87.6 29 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 24 d2fwka1 not modelled 87.4 10 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 25 c3swnT_ not modelled 85.9 29 PDB header:rna binding protein Chain: T: PDB Molecule:u6 snrna-associated sm-like protein lsm6; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings 26 d1i8fa_ not modelled 85.6 32 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 27 c3cw15_ not modelled 85.5 30 PDB header:splicing Chain: 5: PDB Molecule:small nuclear ribonucleoprotein g; PDB Fragment:residues 1-215; PDBTitle: crystal structure of human spliceosomal u1 snrnp 28 d1n9sc_ not modelled 84.8 25 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 29 c1n9sH_ not modelled 83.8 25 PDB header:translation Chain: H: PDB Molecule:small nuclear ribonucleoprotein f; PDBTitle: crystal structure of yeast smf in spacegroup p43212 30 d1n9ra_ not modelled 83.7 25 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 31 c3bw1A_ not modelled 83.5 29 PDB header:rna binding protein Chain: A: PDB Molecule:u6 snrna-associated sm-like protein lsm3; PDBTitle: crystal structure of homomeric yeast lsm3 exhibiting novel octameric2 ring organisation 32 c3swnC_ not modelled 82.4 20 PDB header:rna binding protein Chain: C: PDB Molecule:u6 snrna-associated sm-like protein lsm7; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings 33 d1b34a_ not modelled 81.5 33 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 34 c1b34A_ not modelled 81.5 33 PDB header:rna binding protein Chain: A: PDB Molecule:protein (small nuclear ribonucleoprotein sm d1); PDBTitle: crystal structure of the d1d2 sub-complex from the human snrnp core2 domain 35 d1d3bl_ not modelled 80.0 21 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 36 d1m5q1_ not modelled 78.7 24 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 37 d1d3bb_ not modelled 77.3 21 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 38 c3cw1D_ not modelled 75.5 16 PDB header:splicing Chain: D: PDB Molecule:small nuclear ribonucleoprotein sm d3; PDBTitle: crystal structure of human spliceosomal u1 snrnp 39 c3pgwQ_ not modelled 75.2 20 PDB header:splicing/dna/rna Chain: Q: PDB Molecule:sm b; PDBTitle: crystal structure of human u1 snrnp 40 c3cw1A_ not modelled 71.8 20 PDB header:splicing Chain: A: PDB Molecule:small nuclear ribonucleoprotein-associated proteins b and PDBTitle: crystal structure of human spliceosomal u1 snrnp 41 c1y96C_ not modelled 64.2 23 PDB header:rna binding protein Chain: C: PDB Molecule:gem-associated protein 6; PDBTitle: crystal structure of the gemin6/gemin7 heterodimer from the2 human smn complex 42 d2bo9b2 not modelled 60.5 24 Fold:Cystatin-like Superfamily:Cystatin/monellin Family:Latexin-like 43 c3pgwB_ not modelled 60.0 21 PDB header:splicing/dna/rna Chain: B: PDB Molecule:sm b; PDBTitle: crystal structure of human u1 snrnp 44 c2bo9B_ not modelled 54.2 24 PDB header:hydrolase Chain: B: PDB Molecule:human latexin; PDBTitle: human carboxypeptidase a4 in complex with human latexin. 45 d1ycya1 not modelled 41.4 46 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:PF1955-like 46 d1914a2 not modelled 33.4 35 Fold:Signal recognition particle alu RNA binding heterodimer, SRP9/14 Superfamily:Signal recognition particle alu RNA binding heterodimer, SRP9/14 Family:Signal recognition particle alu RNA binding heterodimer, SRP9/14 47 d1f15a_ not modelled 18.5 19 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Bromoviridae-like VP 48 d2diga1 not modelled 16.8 33 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 49 d1e8ob_ not modelled 16.2 40 Fold:Signal recognition particle alu RNA binding heterodimer, SRP9/14 Superfamily:Signal recognition particle alu RNA binding heterodimer, SRP9/14 Family:Signal recognition particle alu RNA binding heterodimer, SRP9/14 50 d1wlfa1 not modelled 14.1 22 Fold:Cdc48 domain 2-like Superfamily:Cdc48 domain 2-like Family:Cdc48 domain 2-like 51 d1tpna_ not modelled 11.6 21 Fold:FnI-like domain Superfamily:FnI-like domain Family:Fibronectin type I module 52 d1g40a1 not modelled 11.4 23 Fold:Complement control module/SCR domain Superfamily:Complement control module/SCR domain Family:Complement control module/SCR domain 53 c1vjqB_ not modelled 11.3 29 PDB header:structural genomics, de novo protein Chain: B: PDB Molecule:designed protein; PDBTitle: designed protein based on backbone conformation of2 procarboxypeptidase-a (1aye) with sidechains chosen for maximal3 predicted stability. 54 c2kcmA_ not modelled 9.7 20 PDB header:nucleic acid binding protein Chain: A: PDB Molecule:cold shock domain family protein; PDBTitle: solution nmr structure of the n-terminal ob-domain of so_1732 from2 shewanella oneidensis. northeast structural genomics consortium3 target sor210a. 55 c1f15C_ not modelled 8.9 31 PDB header:virus Chain: C: PDB Molecule:coat protein; PDBTitle: cucumber mosaic virus (strain fny) 56 d1sg5a1 not modelled 8.0 19 Fold:Rof/RNase P subunit-like Superfamily:Rof/RNase P subunit-like Family:Rof-like 57 d1f15b_ not modelled 8.0 31 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Bromoviridae-like VP 58 d2c71a1 not modelled 7.8 21 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 59 c2gtiA_ not modelled 7.4 18 PDB header:viral protein Chain: A: PDB Molecule:replicase polyprotein 1ab; PDBTitle: mutation of mhv coronavirus non-structural protein nsp15 (f307l) 60 c3lf4B_ not modelled 7.1 17 PDB header:fluorescent protein Chain: B: PDB Molecule:fluorescent timer precursor blue102; PDBTitle: crystal structure of fluorescent timer precursor blue102 61 d2j13a1 not modelled 6.4 21 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 62 d1g6pa_ not modelled 6.4 30 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 63 d1rqpa1 not modelled 6.1 31 Fold:Bacterial fluorinating enzyme, C-terminal domain Superfamily:Bacterial fluorinating enzyme, C-terminal domain Family:Bacterial fluorinating enzyme, C-terminal domain 64 c2g3dB_ not modelled 6.0 14 PDB header:luminescent protein Chain: B: PDB Molecule:green fluorescent protein; PDBTitle: structure of s65g y66a gfp variant after spontaneous2 peptide hydrolysis 65 c1914A_ not modelled 5.7 35 PDB header:alu domain Chain: A: PDB Molecule:signal recognition particle 9/14 fusion protein; PDBTitle: signal recognition particle alu rna binding heterodimer, srp9/14 66 d1j5ya2 not modelled 5.5 21 Fold:HPr-like Superfamily:Putative transcriptional regulator TM1602, C-terminal domain Family:Putative transcriptional regulator TM1602, C-terminal domain 67 c1wlfA_ not modelled 5.3 23 PDB header:protein transport Chain: A: PDB Molecule:peroxisome biogenesis factor 1; PDBTitle: structure of the n-terminal domain of pex1 aaa-atpase:2 characterization of a putative adaptor-binding domain 68 d2iuwa1 not modelled 5.2 17 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:AlkB-like 69 c2iuwA_ not modelled 5.2 17 PDB header:oxidoreductase Chain: A: PDB Molecule:alkylated repair protein alkb homolog 3; PDBTitle: crystal structure of human abh3 in complex with iron ion2 and 2-oxoglutarate 70 c3iv4A_ not modelled 5.2 23 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: a putative oxidoreductase with a thioredoxin fold 71 d2g9hd2 not modelled 5.1 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:Superantigen toxins, C-terminal domain Family:Superantigen toxins, C-terminal domain