Job Description P33650 Confidence 97.89% Date Thu Jan 5 11:52:32 GMT 2012 Rank 270 Aligned Residues 141 % Identity 16% Template c4a2iV_ PDB info PDB header:ribosome/hydrolase Chain: V: PDB Molecule:putative ribosome biogenesis gtpase rsga; PDBTitle: cryo-electron microscopy structure of the 30s subunit in complex with2 the yjeq biogenesis factor Resolution 16.50 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.													.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	I	G	N	P	N	S	G	K	T	T	L	F	N	Q	L	T	G	S	R	Q	R	V	G	N	W	A	G	V	T	V	E	R	K	E	.	.	.	.	.	.	.	.	.	.	.	.	G	Q	F	S	T	T	D	H	Q	V	T	L	V	D	L	P	G	T	Y	S	L	T	T	I	S	S	Q	T	S	L	D	E	Q
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.
Template Conservation										.	.	.																																																																.	.	.	.	.	.
Template Sequence		L	F	G	E	P	A	E	G	.	.	.	I	V	I	S	R	F	G	M	H	A	D	V	E	S	A	D	G	E	V	H	R	C	N	I	R	R	T	I	R	S	L	V	T	G	D	R	V	V	W	R	P	G	K	V	K	G	I	V	E	A	V	H	E	T	S	V	L	T	R	P	V	K	P	.	.	.	.	.	.
Template Known Secondary structure			B							.	.	.							T	T							T	T	S									T	T						T	T								B																						.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.																																																																.	.	.	.	.	.
Template SS confidence
		43	.	.	.	.	.	.	50				.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.				.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																							.	.	.																																											.	.
Query SS confidence																							.	.	.																																											.	.
Query Sequence		I	A	C	H	Y	I	L	S	G	D	A	D	L	L	I	N	V	V	D	A	S	.	.	.	N	L	E	R	N	L	Y	L	T	L	Q	L	L	E	L	G	I	P	C	I	V	A	L	N	M	L	D	I	A	E	K	Q	N	I	R	I	E	I	D	A	L	S	.	.	A	R	L	G	C	P	V	I	P	L	V	S
Query Conservation																							.	.	.																																											.	.
Alig confidence		.	.	.	.	.	.																.	.	.																																											.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	I	A	A	N	I	D	Q	I	V	I	V	S	A	I	L	P	E	L	S	L	N	I	I	D	R	Y	L	V	G	C	E	T	L	Q	V	E	P	L	I	V	L	N	K	I	D	L	L	D	D	E	G	M	D	F	V	N	E	Q	M	D	I	Y	R	N	I	G	Y	R	V	L	M	V	S	S
Template Known Secondary structure		.	.	.	.	.	.														S	T	T	T																	T										G	G	G																		T	T	T							B	T
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		151	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	G	R	G	I	E	A	L	K	L	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	T	Q	D	G	L	K	P	L	E	E	A	L
Template Known Secondary structure		T	T	T	B	T
Template Predicted Secondary structure
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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