Job Description P33650 Confidence 99.07% Date Thu Jan 5 11:52:32 GMT 2012 Rank 126 Aligned Residues 143 % Identity 30% Template c3izq1_ PDB info PDB header:ribosomal protein,hydrolase Chain: 1: PDB Molecule:elongation factor 1 alpha-like protein; PDBTitle: structure of the dom34-hbs1-gdpnp complex bound to a translating2 ribosome Resolution 9.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.																						.	.	.	.	.	30	.	.	.	.											.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.
Query Sequence		K	K	L	T	I	G	L	I	G	N	P	N	S	G	K	T	T	L	F	N	Q	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	R	Q	R	V	G	N	W	A	.	.	.	.	.	.	.	.	.	.	G	V	T	V	E	R	K	E	G	Q	F	S	T	T	D	H
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	H	L	S	F	V	V	L	G	H	V	D	A	G	K	S	T	L	M	G	R	L	L	Y	D	L	N	I	V	N	Q	S	Q	L	R	K	L	Q	R	E	S	E	T	M	G	K	S	S	F	K	F	A	W	I	M	D	Q	T	N	E	E	R	E	R	G	V	T	V	S	I	C	T	S	H	F	S	T	H	R	A
Template Known Secondary structure												S	S	S											S		S	S		S												S	S		S	S	S	S			S	S	S												T	T	T			S		S							S	S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.										100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.																.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.																.
Query Sequence		Q	V	T	L	V	D	L	P	G	T	Y	S	L	T	T	I	S	S	Q	T	S	L	D	E	Q	I	A	C	H	Y	I	L	S	G	D	A	D	L	L	I	N	V	V	D	A	S	N	L	E	.	.	.	.	.	.	.	.	.	R	N	L	Y	L	T	L	Q	L	L	E	L	G	I	P	.	C	I	V	A	L	N
Query Conservation																																																			.	.	.	.	.	.	.	.	.																.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.																.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	F	T	I	V	D	A	P	G	H	R	D	F	.	.	.	.	.	.	.	.	.	.	.	.	V	P	N	A	I	M	G	I	S	Q	A	D	M	A	I	L	C	V	D	C	S	T	N	A	F	E	S	G	F	D	L	D	G	Q	T	K	E	H	M	L	L	A	S	S	L	G	I	H	N	L	I	I	A	M	N
Template Known Secondary structure										S	S	S			.	.	.	.	.	.	.	.	.	.	.	.					T	T	T	S	S			S									S						T	T			T	T	S											T	T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.													.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		121	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.									.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure							.	.																	.	.	.	.	.	.	.	.
Query SS confidence							.	.																	.	.	.	.	.	.	.	.
Query Sequence		M	L	D	I	A	.	.	E	K	Q	N	I	R	I	E	I	D	A	L	S	A	R	L	.	.	.	.	.	.	.	.	G	C	P	V	I	P	L	V	S	T	R	G	R	G	I
Query Conservation							.	.																	.	.	.	.	.	.	.	.
Alig confidence							.	.																	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	M	D	N	V	D	W	S	Q	Q	R	F	E	E	I	K	S	K	L	L	P	Y	L	V	D	I	G	F	F	E	D	N	I	N	W	V	P	I	S	G	F	S	G	E	G	V
Template Known Secondary structure			T	T	T	T	T	T																				T			G	G	G								T	T	T		T	T	T
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions