Job Description P33650 Confidence 98.91% Date Thu Jan 5 11:52:32 GMT 2012 Rank 204 Aligned Residues 210 % Identity 14% Template c3dpuA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:rab family protein; PDBTitle: roccor domain tandem of rab family protein (roco) Resolution 2.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	K	L	T	I	G	L	I	G	N	P	N	S	G	K	T	T	L	F	N	Q	L	T	G	S	R	Q	R	V	G	N	W	A	G	V	T	V	E	R	K	E	G	Q	F	S	T	T	D	H	Q	V	T	L	V	D	L	P	G	T	Y	S	L	T	T	I	S	S	Q	T	S	L	D	E	Q	I	A	C	H	Y
Query Conservation
Alig confidence																																																.																						.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.																						.	.	.	.	.	.	.	.	.	.
Template Sequence		L	Q	E	I	K	V	H	L	I	G	D	G	M	A	G	K	T	S	L	L	K	Q	L	I	G	G	L	N	V	V	T	K	Q	A	P	N	I	K	G	L	E	N	D	D	E	L	.	K	E	C	L	F	H	F	W	D	F	G	G	Q	E	I	M	H	A	S	H	Q	.	.	.	.	.	.	.	.	.	.	F	F
Template Known Secondary structure											S	S	S		S	S																			G	G	G	S	G	G	G	T	T		S	T	T	.	T	T										S			T	T	T	T	T			.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																.																						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.		.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.											.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110			.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.																								.
Query SS confidence																																.	.																								.
Query Sequence		I	L	S	G	D	A	D	L	L	I	N	V	V	D	A	S	N	L	E	R	N	L	Y	L	T	L	Q	L	L	E	.	.	L	G	I	P	C	I	V	A	L	N	M	L	D	I	A	E	K	Q	N	I	R	I	E	.	I	D	A	L	S	A	R	L	G	C	P	V	I	P	L	V	S	T	R	G	R	G	I	E
Query Conservation																																.	.																								.
Alig confidence			.	.																												.	.																								.																					.	.	.	.
Template Conservation			.	.																																																																										.	.	.	.
Template Sequence		M	.	.	T	R	S	S	V	Y	M	L	L	L	D	S	R	T	D	S	N	K	H	Y	W	L	R	H	I	E	K	Y	G	G	K	S	P	V	I	V	V	M	N	K	I	D	E	N	P	S	Y	N	I	E	Q	K	K	I	N	E	R	F	P	A	I	E	N	R	F	H	R	I	S	C	V	E	S	.	.	.	.
Template Known Secondary structure			.	.		S	S									G	G	G	G	G	G												S	S	S										T	T	T		T	T													G	G	G	T	T									T	T	.	.	.	.
Template Predicted Secondary structure			.	.																																																																										.	.	.	.
Template SS confidence
		530			.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	K	L	A	I	D	R	Y	K	A	N	E	N	V	E	L	V	H	Y	A	Q	P	L	L	N	E	A	D	S	L	A	K	V	M	P	S	D	I	P	L	K	Q	R	R	W	L	G	L	Q	M	L	E	G	D	I	Y	S	R	A	Y	A	G	E	A	S	Q	H	L	D	A
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	I	A	K	S	L	K	S	A	V	L	H	P	D	S	I	Y	G	T	P	L	A	P	S	W	I	K	V	K	E	K	L	V	E	A	T	T	A	Q	R	Y	L	N	R	T	E	V	E	K	I	C	N	D	S	G	I	T	D	P	G	E	R	K	T	L	L	G	Y	L	N	N
Template Known Secondary structure		.										T		T	T	S	G	G	G			B																		S	S														T	T
Template Predicted Secondary structure		.
Template SS confidence
			609	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions