Job Description P33650 Confidence 97.72% Date Thu Jan 5 11:52:32 GMT 2012 Rank 278 Aligned Residues 139 % Identity 19% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.							.	.	.	.	.	30																		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	K	L	T	I	G	L	I	G	N	P	N	S	G	K	T	T	L	F	N	Q	L	T	.	.	.	.	.	.	G	S	R	Q	R	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	N	W	A	G	V	T	V	E	R	K	E	G	Q	F	S	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																									.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	P	T	I	L	L	M	V	G	I	Q	G	S	G	K	T	T	T	V	A	K	L	A	R	Y	F	Q	K	R	G	Y	K	V	G	V	V	C	S	D	T	W	R	P	G	A	Y	H	Q	L	R	Q	L	L	D	R	Y	H	I	E	V	F	G	N	P	Q	E	K	D	A	I	K	L	A	K	E	G	V	D	Y	F
Template Known Secondary structure		S	S									T	T	S	S														T	T	T											S	S	T											G	G	G	T							T	T
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
			47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	T	T	D	H	Q	V	T	L	V	D	L	P	G	T	Y	S	L	T	T	I	S	S	Q	T	S	L	D	E	Q	I	A	C	H	Y	I	L	S	G	D	A	D	L	L	I	N	V	V	D	A	S	N	L	E	R	N	L	Y	L	T	L	Q	L	L	E	L	G	I	P	C	I	V	A	L	N	M	L	D	I	A
Query Conservation		.
Alig confidence		.																					.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.
Template Sequence		K	S	K	G	V	D	I	I	I	V	D	T	A	G	R	H	K	E	D	K	A	.	.	.	.	.	.	L	I	E	E	M	K	Q	I	S	N	V	I	H	P	H	E	V	I	L	V	I	D	G	T	I	G	Q	Q	A	Y	N	Q	A	L	A	F	K	E	A	T	P	I	G	S	I	I	V	T	K	L	D	G	S
Template Known Secondary structure				T	T		S										S	S					.	.	.	.	.	.															S								G	G	G	G	G	G											S		T	T									S	S
Template Predicted Secondary structure																							.	.	.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.							200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	Q	N	I	R	I	E	I	D	A	L	S	A	R	L	G	C	P	V	I	P	L	V
Query Conservation
Alig confidence													.	.	.
Template Conservation													.	.	.
Template Sequence		A	K	G	G	G	A	L	S	A	V	A	.	.	.	A	T	G	A	P	I	K	F	I	G
Template Known Secondary structure		S	S										.	.	.	T	T
Template Predicted Secondary structure													.	.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.				.	.	.	.	.	.	270	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions