Job Description P33650 Confidence 99.53% Date Thu Jan 5 11:52:32 GMT 2012 Rank 29 Aligned Residues 165 % Identity 18% Template c3degC_ PDB info PDB header:ribosome Chain: C: PDB Molecule:gtp-binding protein lepa; PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp Resolution NULL Å

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		1	.	.	.		.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.				.	.	.	.	.	.	30	.	.	.	.													.	.	.	.	.	40	.	.	.	.	.	.	.	.						.	50	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.																				.	.	.												.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.
Query SS confidence						.																				.	.	.												.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.
Query Sequence		M	K	K	L	.	T	I	G	L	I	G	N	P	N	S	G	K	T	T	L	F	N	Q	L	.	.	.	T	G	S	R	Q	R	V	G	N	W	A	.	.	.	.	.	.	.	.	.	.	.	.	G	V	T	V	E	R	K	E	G	Q	F	S	T	T	.	.	.	.	.	D	H	Q	V	T	L	V	D	L	P	G
Query Conservation						.																				.	.	.												.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.
Alig confidence						.																				.	.	.												.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.
Template Conservation
Template Sequence		M	K	N	I	R	N	F	S	I	I	A	H	I	D	H	G	K	S	T	L	S	D	R	I	I	Q	I	C	G	G	L	S	D	R	E	M	E	A	Q	V	L	D	S	M	D	L	E	R	E	R	G	I	T	I	K	A	Q	S	V	T	L	D	Y	K	A	S	D	G	E	T	Y	Q	L	N	F	I	D	T	P	G
Template Known Secondary structure			T	T										S	S	S	S	S	S										S	S			S	S				S	S	S			S	S	S							T	S		S	S											T	T	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.
Predicted Secondary structure																																									.	.																															.	.
Query SS confidence																																									.	.																															.	.
Query Sequence		T	Y	S	L	T	T	I	S	S	Q	T	S	L	D	E	Q	I	A	C	H	Y	I	L	S	G	D	A	D	L	L	I	N	V	V	D	A	S	N	L	.	.	E	R	N	L	Y	L	T	L	Q	L	L	E	L	G	I	P	C	I	V	A	L	N	M	L	D	I	A	E	K	Q	.	.	N	I	R	I	E	I	D
Query Conservation																																									.	.																															.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.																		.	.																															.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	V	D	F	S	Y	E	V	S	R	.	.	.	.	.	.	.	.	.	.	.	.	S	L	A	A	C	E	G	A	L	L	V	V	D	A	G	Q	G	V	E	A	Q	T	L	A	N	C	Y	T	A	M	E	M	D	L	E	V	V	P	V	L	N	K	I	D	L	P	A	A	D	P	E	R	V	A	E	E	I	E
Template Known Secondary structure			S	T	T							.	.	.	.	.	.	.	.	.	.	.	.			T	T		S								T	T	T				T												T	T										T	T	S	T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90													.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	S	A	R	L	G	C	P	V	I	P	L	V	S	T	R	G	R	G	I	E	A	L	K	L	A	I	D	R	Y	K	A	N	E	N	V	E	L	V	H	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	V	G	I	D	A	T	D	A	V	R	C	S	A	K	T	G	V	G	V	Q	D	V	L	E	R	L	V	R	D	I	P	P	P	E	G	D	P	E	G	P
Template Known Secondary structure				T					T	T						T	T	T		T	T												S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions