Job Description P33650 Confidence 98.90% Date Thu Jan 5 11:52:32 GMT 2012 Rank 209 Aligned Residues 153 % Identity 16% Template c3cpjB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:gtp-binding protein ypt31/ypt8; PDBTitle: crystal structure of ypt31 in complex with yeast rab-gdi Resolution 2.35 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	I	G	L	I	G	N	P	N	S	G	K	T	T	L	F	N	Q	L	T	G	S	R	Q	R	V	G	N	W	A	G	V	T	V	E	R	K	E	G	Q	F	S	T	T	D	H	Q	V	T	L	V	D	L	P	G	T	Y	S	L	T	T	I	S	S	Q	T	S	L	D	E	Q	I	A	C	H	Y	I	L	S
Query Conservation
Alig confidence																											.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	K	I	V	L	I	G	D	S	G	V	G	K	S	N	L	L	S	R	F	T	K	N	E	F	.	.	.	.	N	M	G	V	E	F	A	T	R	T	L	E	I	E	G	K	R	I	K	A	Q	I	W	D	T	A	G	Q	E	R	Y	R	A	I	T	S	A	.	.	.	.	.	.	.	.	.	.	.	.	Y	Y
Template Known Secondary structure								S		T	T	S	S														.	.	.	.					S									T	T											T	T	T	T	T	T	T				G	G	.	.	.	.	.	.	.	.	.	.	.	.	G	T
Template Predicted Secondary structure																											.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.					.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.													.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.				.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.																																				.
Query SS confidence																	.	.	.																																				.
Query Sequence		G	D	A	D	L	L	I	N	V	V	D	A	S	N	L	.	.	.	E	R	N	L	Y	L	T	L	Q	L	L	E	L	G	I	P	C	I	V	A	L	N	M	L	D	I	A	E	K	Q	N	I	R	I	E	.	I	D	A	L	S	A	R	L	G	C	P	V	I	P	L	V	S	T	R	G	R	G	I	E	A	L
Query Conservation																	.	.	.																																				.
Alig confidence																	.	.	.																																				.																			.
Template Conservation																																																																										.
Template Sequence		R	G	A	V	G	A	L	I	V	Y	D	S	K	S	S	S	Y	E	N	C	N	H	W	L	S	E	L	R	E	N	A	D	V	A	V	G	L	I	G	N	K	S	D	L	A	H	L	R	A	V	P	T	E	E	S	K	T	F	A	Q	E	N	Q	L	L	F	T	E	T	S	A	L	.	S	E	N	V	D	K	A
Template Known Secondary structure		T	T																																								G	G	G	G	G	G			S												T	T										.
Template Predicted Secondary structure																																																																										.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	A	I	D	R	Y	K	A	N	E	N	V	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	E	E	L	I	N	T	I	Y	Q	K	V	P	T
Template Known Secondary structure										T	T
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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