Job Description P33650 Confidence 99.08% Date Thu Jan 5 11:52:32 GMT 2012 Rank 122 Aligned Residues 152 % Identity 26% Template c3agqA_ PDB info PDB header:translation,transferase Chain: A: PDB Molecule:elongation factor ts, elongation factor tu 1, linker, q PDBTitle: structure of viral polymerase form ii Resolution 3.22 Å

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		1	.	.												.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	K	.	.	.	.	.	.	.	.	.	.	.	L	T	I	G	L	I	G	N	P	N	S	G	K	T	T	L	F	N	Q	L	T	G	S	R	Q	R	V	G	N	W	A	G	V	T	V	E	R	K	E	G	Q	F	S	T	T	D	H	Q	V	T	L	V	D	L	P	G	T	Y	S	L	T	T	I	S	S	Q
Query Conservation					.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.																								.	.	.													.	.	.																.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.													.	.	.																.	.	.	.	.	.	.	.	.	.
Template Sequence		S	K	Q	S	H	M	S	F	E	R	T	K	P	H	V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	I	T	T	V	.	.	.	L	A	K	T	Y	G	G	T	S	H	V	E	.	.	.	Y	D	T	P	T	R	H	Y	A	H	V	D	C	P	G	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T	T	G	G	G						S											T	T	S	S												.	.	.	T	T	T	T	S								.	.	.				S	S											.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.	.	.													.	.	.																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.				.	.	.	320	.	.	.	.	.	.	.	.				.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.
Predicted Secondary structure															.																	.	.																	.																						.							.	.	.
Query SS confidence															.																	.	.																	.																						.							.	.	.
Query Sequence		T	S	L	D	E	Q	I	A	C	H	Y	I	L	.	S	G	D	A	D	L	L	I	N	V	V	D	A	S	N	L	.	.	E	R	N	L	Y	L	T	L	Q	L	L	E	L	G	I	P	.	C	I	V	A	L	N	M	L	D	I	A	E	K	Q	N	I	R	I	E	I	D	.	A	L	S	A	R	L	.	.	.
Query Conservation															.																	.	.																	.																						.							.	.	.
Alig confidence		.	.	.											.																	.	.																	.																						.							.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	H	A	D	Y	V	K	N	M	I	T	G	A	A	Q	M	D	G	A	I	L	V	V	A	A	T	D	G	P	M	P	Q	T	R	E	H	I	L	L	G	R	Q	V	G	V	P	Y	I	I	V	F	L	N	K	C	D	M	V	D	D	E	E	L	L	E	L	V	E	M	E	V	R	E	L	L	S	Q	Y
Template Known Secondary structure		.	.	.											T	S				S								T	T	T		S		G	G	G										T	T		S										T	T		S		T	T	T												T	G	G	G
Template Predicted Secondary structure		.	.	.
Template SS confidence
					369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
							142	.	.	.	.	.	.	.	150	.	.	.									.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure		.	.	.	.	.													.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.													.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	G	C	P	V	I	P	L	V	S	T	R	G	.	.	.	.	.	.	.	.	R	G	I	E	A	L	K	L	A	I	D	R	Y	K	A	N	E	N
Query Conservation		.	.	.	.	.													.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.													.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	F	P	G	D	D	T	P	I	V	R	G	S	A	L	K	A	L	E	G	D	A	E	W	E	A	K	I	L	E	L	A	G	F	L	D	S	Y	I	P	E	P	E
Template Known Secondary structure		T	S		T	T	T								T	T	T	T	T	T	T																		T	S
Template Predicted Secondary structure
Template SS confidence
		446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions