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Job DescriptionP33650
Confidence99.45%DateThu Jan 5 11:52:32 GMT 2012
Rank40Aligned Residues194
% Identity15%Templatec2wwwB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:methylmalonic aciduria type a protein, PDBTitle: crystal structure of methylmalonic acidemia type a protein
Resolution2.64 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.... ..... 30.........40.........50. ........60.........70....
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Query Sequence  LTIGLIGNPNSGKTTLFNQLT. . . . . . GSRQR. VGNWAGVTVERKEGQFSTTDHQ. . VTLVDLPGTYSLTTISSQTSLDE
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Template Sequence  FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDTELSRDMNAYIRPTRTTNEAILLCEGAGYDIILIETVGQSEFA
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   144.....150.........160.........170.........180.........190.........200.........210.........220...
 
   75....80.........90.........100.........110.........120.........130.........140.. ..
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Query Sequence  QIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLG. . . . . . . . . . CP
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Template Sequence  VA. . . . . . . DMVDMFVLLLPPI. . . . . . . . . . . . . . IEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPK
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   253. .....260....... ..270.........280.........290.........300.........310.
 
   145....150.........160.........170.........180.........190.........200.........210.........220....
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Query Sequence  VIPLVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAYAGEASQ
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Template Sequence  VIRISARSGEGISEMWDKMKDFQDLMLASGELTAKRRKQQKVWMWNLI. . . . . . . . . QESVLEHFRTHPTVREQIPLLEQ
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   324.....330.........340.........350.........360.........370. ........380.........390....
 
   225..
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Query Sequence  HLD
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Template Sequence  KVL
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   395..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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