Job Description P33650 Confidence 97.51% Date Thu Jan 5 11:52:32 GMT 2012 Rank 292 Aligned Residues 147 % Identity 22% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.																																		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Query Sequence		K	K	L	T	I	G	L	I	G	N	P	N	S	G	K	T	T	L	F	N	Q	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	R	Q	R	V	G	N	W	A	G	V	T	V	E	R	.	.	K	E	G	Q	F	S
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation
Template Sequence		K	Q	N	V	I	L	L	V	G	I	Q	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	K	R	G	L	K	P	A	L	I	A	A	D	T	Y	R	P	A	A	Y	E	Q	L	K	Q	L	A	E	K	I	H	V	P	I	Y	G	D	E	T	R	T	K	S	P	V	D	I	V	K	E	G	M	E	K
Template Known Secondary structure		S										S	S	S	S	T	T																							S				T	T	G	G	G	S	S							S	S							S	S	S			S	S	S	T	T							T
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		T	T	D	H	Q	V	T	L	V	D	L	P	G	T	Y	S	L	T	T	I	S	S	Q	T	S	L	D	E	Q	I	A	C	H	Y	I	L	S	G	D	A	D	L	L	I	N	V	V	D	A	S	N	L	E	R	N	L	Y	L	T	L	Q	L	L	E	L	.	G	I	P	C	I	V	A	L	N	M	L	D	I	A
Query Conservation																																																																			.
Alig confidence															.	.	.	.	.	.																																															.
Template Conservation															.	.	.	.	.	.
Template Sequence		F	K	K	A	D	V	L	I	I	D	T	A	G	.	.	.	.	.	.	R	H	K	E	E	K	G	L	L	E	E	M	K	Q	I	K	E	I	T	N	P	D	E	I	I	L	V	I	D	G	T	I	G	Q	Q	A	G	I	Q	A	K	A	F	K	E	A	V	G	E	I	G	S	I	I	V	T	K	L	D	G	S
Template Known Secondary structure		T	S	S		S									.	.	.	.	.	.	S		S	S											T	T	S	S	S			S								G	G	G	G	G	G										T	T	S		S									S	S	S
Template Predicted Secondary structure															.	.	.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.							.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	Q	N	I	R	I	E	I	D	A	L	S	A	R	L	G	C	P	V	I	P	L	V	S	T	R	G	R	G	I	E	A	L
Query Conservation
Alig confidence													.	.	.										.	.
Template Conservation													.	.	.										.	.
Template Sequence		A	K	G	G	G	A	L	S	A	V	A	.	.	.	E	T	K	A	P	I	K	F	I	.	.	G	I	G	E	G	I	D	D	L
Template Known Secondary structure		S	T	T									.	.	.		S	S							.	.			S	S	S	S	S	S
Template Predicted Secondary structure													.	.	.										.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.				.	.	.	.	.	.	270	.	.			.	.	.	.	.	.	.	280	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions