Job Description P33650 Confidence 99.07% Date Thu Jan 5 11:52:32 GMT 2012 Rank 125 Aligned Residues 154 % Identity 17% Template c2q3fB_ PDB info PDB header:protein binding Chain: B: PDB Molecule:ras-related gtp-binding protein d; PDBTitle: x-ray crystal structure of putative human ras-related gtp2 binding d in complex with gmppnp Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.																						.
Query SS confidence																															.																						.
Query Sequence		M	K	K	L	T	I	G	L	I	G	N	P	N	S	G	K	T	T	L	F	N	Q	L	T	G	S	R	Q	R	.	V	G	N	W	A	G	V	T	V	E	R	K	E	G	Q	F	S	T	T	D	H	.	Q	V	T	L	V	D	L	P	G	T	Y	S	L	T	T	I	S	S	Q	T	S	L	D	E	Q	I	A	C
Query Conservation																															.																						.
Alig confidence					.																										.																						.																				.	.	.	.	.	.	.	.	.
Template Conservation					.																																																																				.	.	.	.	.	.	.	.	.
Template Sequence		V	K	P	.	R	I	L	L	X	G	L	R	R	S	G	K	S	S	I	Q	K	V	V	F	H	K	X	S	P	N	E	T	L	F	L	E	S	T	N	K	I	C	R	E	D	V	S	N	S	S	F	V	N	F	Q	I	W	D	F	P	G	Q	I	D	F	F	D	P	T	F	D	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					.							S	T	T	S	S										S				G	G	G	G	G	G						S									S	S											S				T	T		T	T			.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.																																																																				.	.	.	.	.	.	.	.	.
Template SS confidence
		42	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.								.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure																																			.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Query Sequence		H	Y	I	L	S	G	D	A	D	L	L	I	N	V	V	D	A	S	N	L	E	R	N	L	Y	L	T	L	Q	L	L	E	L	.	.	.	.	.	.	.	G	I	P	C	I	V	A	L	N	M	L	D	I	A	E	K	Q	N	I	R	I	E	I	D	A	L	S	A	R	L	.	.	.	.	.	.	.	.	.	.
Query Conservation																																			.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	E	X	I	F	R	G	T	G	A	L	I	F	V	I	D	S	Q	D	D	Y	X	E	A	L	A	R	L	H	L	T	V	T	R	A	Y	K	V	N	T	D	I	N	F	E	V	F	I	H	K	V	D	G	L	S	D	D	H	K	I	E	T	Q	R	D	I	H	Q	R	A	N	D	D	L	A	D	A	G	L	E
Template Known Secondary structure								T										T	T	S																					T	T										T	T	S	S																							T	T		T
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
				142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	G	C	P	V	I	P	L	V	S	T	R	G	R	G	I	E	A	L	K	L	A	I	D	R
Query Conservation		.	.
Alig confidence		.	.													.
Template Conservation																.
Template Sequence		K	I	H	L	S	F	Y	L	T	S	I	Y	D	H	.	S	I	F	E	A	F	S	K	V	V	Q
Template Known Secondary structure		T	S									T	T	S	S	.
Template Predicted Secondary structure																.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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