Job Description P33650 Confidence 98.63% Date Thu Jan 5 11:52:32 GMT 2012 Rank 242 Aligned Residues 145 % Identity 19% Template c2o52B_ PDB info PDB header:protein transport Chain: B: PDB Molecule:ras-related protein rab-4b; PDBTitle: crystal structure of human rab4b in complex with gdp Resolution 2.20 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	I	G	L	I	G	N	P	N	S	G	K	T	T	L	F	N	Q	L	T	G	S	R	Q	R	V	G	N	W	A	G	V	T	V	E	R	K	E	G	Q	F	S	T	T	D	H	Q	V	T	L	V	D	L	P	G	T	Y	S	L	T	T	I	S	S	Q	T	S	L	D	E	Q	I	A	C	H	Y	I	L	S
Query Conservation
Alig confidence																																										.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	K	F	L	V	I	G	S	A	G	T	G	K	S	C	L	L	H	Q	F	I	E	V	E	F	G	S	R	V	V	N	V	G	G	K	T	V	K	L	Q	.	.	.	.	.	.	.	.	.	.	I	W	D	T	A	G	Q	E	R	F	R	S	V	T	R	S	Y	Y	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								S	S	T	T	S	S																					T	T							.	.	.	.	.	.	.	.	.	.					T	T	G	G	G	T	S								.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.											.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.							.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.																																				.
Query SS confidence																	.	.	.	.	.	.																																				.
Query Sequence		G	D	A	D	L	L	I	N	V	V	D	A	S	N	L	.	.	.	.	.	.	E	R	N	L	Y	L	T	L	Q	L	L	E	L	G	I	P	C	I	V	A	L	N	M	L	D	I	A	E	K	Q	N	I	R	I	E	.	I	D	A	L	S	A	R	L	G	C	P	V	I	P	L	V	S	T	R	G	R	G	I
Query Conservation																	.	.	.	.	.	.																																				.
Alig confidence																	.	.	.	.	.	.																																				.
Template Conservation
Template Sequence		R	G	A	A	G	A	L	L	V	Y	D	I	T	S	R	E	T	Y	N	S	L	A	A	W	L	T	D	A	R	T	L	A	S	P	N	I	V	V	I	L	C	G	N	K	K	D	L	D	P	E	R	E	V	T	F	L	E	A	S	R	F	A	Q	E	N	E	L	M	F	L	E	T	S	A	L	T	G	E	N	V
Template Known Secondary structure		T	T		S								T	T							T												T		T	T										G	G	G	G	G	G			S												T	T								T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	L	K	L	A	I	D	R	Y	K	A	N	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	A	F	L	K	C	A	R	T	I	L	N	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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