Job Description P33650 Confidence 98.53% Date Thu Jan 5 11:52:32 GMT 2012 Rank 248 Aligned Residues 150 % Identity 17% Template c2il1A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:rab12; PDBTitle: crystal structure of a predicted human gtpase in complex with gdp Resolution 2.10 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	T	I	G	L	I	G	N	P	N	S	G	K	T	T	L	F	N	Q	L	T	G	S	R	Q	R	V	G	N	W	A	G	V	T	V	E	R	K	E	G	Q	F	S	T	T	D	H	Q	V	T	L	V	D	L	P	G	T	Y	S	L	T	T	I	S	S	Q	T	S	L	D	E	Q	I	A	C	H	Y	I	L
Query Conservation
Alig confidence																									.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	L	Q	V	I	I	I	G	S	R	G	V	G	K	T	S	L	M	E	R	F	T	D	.	.	.	.	.	.	S	T	V	G	V	D	F	K	I	K	T	V	E	L	R	G	K	K	I	R	L	Q	I	W	D	T	A	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	E	R	F	N	S	I	T	S	A	Y
Template Known Secondary structure										S	T	T	S	S											.	.	.	.	.	.			T	T											T	T													S	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G
Template Predicted Secondary structure																									.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160							.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.													190	.	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.							.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.																																				.	.
Query SS confidence																		.	.	.	.	.	.																																				.	.
Query Sequence		S	G	D	A	D	L	L	I	N	V	V	D	A	S	N	L	.	.	.	.	.	.	E	R	N	L	Y	L	T	L	Q	L	L	E	L	G	I	P	C	I	V	A	L	N	M	L	D	I	A	E	K	Q	N	I	R	I	E	.	.	I	D	A	L	S	A	R	L	G	C	P	V	I	P	L	V	S	T	R	G	R
Query Conservation																		.	.	.	.	.	.																																				.	.
Alig confidence																		.	.	.	.	.	.																																				.	.
Template Conservation
Template Sequence		Y	R	S	A	K	G	I	I	L	V	Y	D	I	T	K	K	E	T	F	D	D	L	P	K	W	M	K	M	I	D	K	Y	A	S	E	D	A	E	L	L	L	V	G	N	K	L	D	C	E	T	D	R	E	I	T	R	Q	Q	G	E	K	F	A	Q	Q	I	T	G	M	R	F	C	E	A	S	A	K	D	N	F
Template Known Secondary structure						S								T	T							T												S		T	T										G	G	G	G	G	G			S											T	S	T	T							B	T	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	E	A	L	K	L	A	I	D	R	Y	K	A	N	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	V	D	E	I	F	L	K	L	V	D	D	I	L	K	K
Template Known Secondary structure		S															T
Template Predicted Secondary structure
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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