Job Description P33650 Confidence 99.00% Date Thu Jan 5 11:52:32 GMT 2012 Rank 151 Aligned Residues 164 % Identity 15% Template c2hxsA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:ras-related protein rab-28; PDBTitle: crystal structure of rab28a gtpase in the inactive (gdp-3'p-2 bound) form Resolution 1.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		M	K	K	L	T	I	G	L	I	G	N	P	N	S	G	K	T	T	L	F	N	Q	L	T	G	S	R	Q	R	V	G	N	W	A	G	V	T	V	E	R	K	E	G	Q	F	S	T	T	D	.	H	Q	V	T	L	V	D	L	P	G	T	Y	S	L	T	T	I	S	S	Q	T	S	L	D	E	Q	I	A	C	H
Query Conservation																																																			.
Alig confidence																																																			.																				.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.	.	.	.	.
Template Sequence		M	R	Q	L	K	I	V	V	L	G	D	G	A	S	G	K	T	S	L	T	T	C	F	A	Q	E	T	F	G	K	Q	Y	K	Q	T	I	G	L	D	F	F	L	R	R	I	T	L	P	G	N	L	N	V	T	L	Q	I	W	D	I	G	G	Q	T	I	G	G	K	M	.	.	.	.	.	.	.	.	.	.	L
Template Known Secondary structure													T	T	S	S										G	G	G	T	T						T	T	T	S	S									T	T	T											T	T			T	T		T	T	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.											.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.										.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.																																				.
Query SS confidence																					.	.	.	.	.	.	.	.	.																																				.
Query Sequence		Y	I	L	S	G	D	A	D	L	L	I	N	V	V	D	A	S	N	L	.	.	.	.	.	.	.	.	.	E	R	N	L	Y	L	T	L	Q	L	L	E	L	G	I	P	C	I	V	A	L	N	M	L	D	I	A	E	K	Q	N	I	R	I	E	.	I	D	A	L	S	A	R	L	G	C	P	V	I	P	L	V
Query Conservation																					.	.	.	.	.	.	.	.	.																																				.
Alig confidence																					.	.	.	.	.	.	.	.	.																																				.
Template Conservation
Template Sequence		D	K	Y	I	Y	G	A	Q	G	V	L	L	V	Y	D	I	T	N	Y	Q	S	F	E	N	L	E	D	W	Y	T	V	V	K	K	V	S	E	E	S	E	T	Q	P	L	V	A	L	V	G	N	K	I	D	L	E	H	M	R	T	I	K	P	E	K	H	L	R	F	C	Q	E	N	G	F	S	S	H	F	V	S
Template Known Secondary structure						T	T		S								T	T							T																T												G	G	G	G	G	G		S	S													T
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	R	G	R	G	I	E	A	L	K	L	A	I	D	R	Y	K	A	N	E	N	V	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	T	G	D	S	V	F	L	C	F	Q	K	V	A	A	E	I	L	G	I	K	L	N	K
Template Known Secondary structure		T	T	T		T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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