Job Description P33650 Confidence 98.44% Date Thu Jan 5 11:52:32 GMT 2012 Rank 254 Aligned Residues 141 % Identity 14% Template c2hupB_ PDB info PDB header:signaling protein Chain: B: PDB Molecule:ras-related protein rab-43; PDBTitle: crystal structure of human rab43 in complex with gdp Resolution 2.05 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	I	G	L	I	G	N	P	N	S	G	K	T	T	L	F	N	Q	L	T	G	S	R	Q	R	V	G	N	W	A	G	V	T	V	E	R	K	E	G	Q	F	S	T	T	D	H	Q	V	T	L	V	D	L	P	G	T	Y	S	L	T	T	I	S	S	Q	T	S	L	D	E	Q	I	A	C	H	Y	I	L	S
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	K	L	V	L	V	G	D	A	S	V	G	K	T	C	V	V	Q	R	F	K	T	G	A	F	.	.	.	.	.	.	.	.	.	.	.	D	F	T	M	K	T	L	E	I	R	V	K	L	Q	I	W	D	T	A	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	E	R	F	R	T	I	T	Q	S	Y	Y
Template Known Secondary structure										T	T	S	S											S			.	.	.	.	.	.	.	.	.	.	.																			T	T		.	.	.	.	.	.	.	.	.	.	.	.	G	G	G
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.												.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.													.	.	.	.	.	70	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.							.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.																																				.	.
Query SS confidence																	.	.	.	.	.	.																																				.	.
Query Sequence		G	D	A	D	L	L	I	N	V	V	D	A	S	N	L	.	.	.	.	.	.	E	R	N	L	Y	L	T	L	Q	L	L	E	L	G	I	P	C	I	V	A	L	N	M	L	D	I	A	E	K	Q	N	I	R	I	E	.	.	I	D	A	L	S	A	R	L	G	C	P	V	I	P	L	V	S	T	R	G	R	G
Query Conservation																	.	.	.	.	.	.																																				.	.
Alig confidence																	.	.	.	.	.	.																																				.	.
Template Conservation
Template Sequence		R	S	A	N	G	A	I	L	A	Y	D	I	T	K	R	S	S	F	L	S	V	P	H	W	I	E	D	V	R	K	Y	A	G	S	N	I	V	Q	L	L	I	G	N	K	S	D	L	S	E	L	R	E	V	S	L	A	E	A	Q	S	L	A	E	H	Y	D	I	L	C	A	I	E	T	S	A	K	D	S	S	N
Template Known Secondary structure		T	T		S								T	T																			S		S											G	G	G	G	G	G			S												T	T		S							T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	A	L	K	L	A	I	D	R	Y	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	E	A	F	L	R	V	A	T	E	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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