Job Description P33650 Confidence 98.02% Date Thu Jan 5 11:52:32 GMT 2012 Rank 261 Aligned Residues 161 % Identity 25% Template c1tndA_ PDB info PDB header:binding protein(gtp) Chain: A: PDB Molecule:transducin; PDBTitle: the 2.2 angstroms crystal structure of transducin-alpha complexed with2 gtp gamma s Resolution 2.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	K	L	T	I	G	L	I	G	N	P	N	S	G	K	T	T	L	F	N	Q	L	T	G	S	R	Q	R	V	G	N	W	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.
Template Sequence		R	T	V	K	L	L	L	L	G	A	G	E	S	G	K	S	T	I	V	K	Q	M	K	.	.	I	I	H	Q	D	G	Y	S	L	E	E	C	L	E	F	I	A	I	I	Y	G	N	T	L	Q	S	I	L	A	I	V	R	A	M	T	T	L	N	I	Q	Y	G	D	S	A	R	Q	D	D	A	R	K	L	M	H
Template Known Secondary structure											S	T	T	S	S										.	.				S																																	T	T				S	S	T	T
Template Predicted Secondary structure																									.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
																																																																							35	.	.	.	.	40	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	T	V	E	R	K	E	G	Q	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	A	D	T	I	E	E	G	T	M	P	K	E	M	S	D	I	I	Q	R	L	W	K	D	S	G	I	Q	A	C	F	D	R	A	S	E	Y	Q	L	N	D	S	A	G	Y	Y	L	S	D	L	E	R	L	V	T	P	G	Y	V	P	T	E	Q	D	V	L	R	S	R	V	K	T	T	G	I	I	E	T	Q	F
Template Known Secondary structure			T	T	T	S		T	T																S								T	T	G	G	G	S				T	T						T	T					T	S	T	T																	S
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.														.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Query Sequence		S	T	T	D	H	Q	V	T	L	V	D	L	P	G	T	Y	S	L	T	T	I	S	S	Q	T	S	L	D	E	Q	I	A	C	H	Y	I	L	S	G	D	A	D	L	L	I	N	V	V	D	A	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	R	N	L	Y	L	T	L	Q	L	L	E	.	.
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	F	K	D	L	N	F	R	M	F	D	V	G	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	R	S	E	R	K	K	W	I	H	C	F	E	G	V	T	C	I	I	F	I	A	A	L	S	A	Y	D	M	V	L	V	E	D	D	E	V	N	R	M	H	E	S	L	H	L	F	N	S	I	C	N	H	R
Template Known Secondary structure				T	T											S	.	.	.	.	.	.	.	.	.	.	.	.					G	G	G	G	G	G		T	T		S								G	G	G	G	G		B		S	S		T	T	S	B														T		S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200													.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
				111	.	.	.	.	.	.	.	.	120	.	.	.	.																		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.											.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure		.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	L	G	I	P	C	I	V	A	L	N	M	L	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	K	Q	N	I	R	I	E	I	D	A	L	S	A	R	L	.	.	.	.	.	.	.	.	.	.	G	C	P	V	I	P	L	V	S	T	R	G	R	G	I	E	A	L	K	L
Query Conservation		.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	F	A	T	T	S	I	V	L	F	L	N	K	K	D	V	F	S	E	K	I	K	K	A	H	L	S	I	C	F	P	D	Y	N	G	P	N	T	Y	E	D	A	G	N	Y	I	K	V	Q	F	L	E	L	N	M	R	R	D	V	K	E	I	Y	S	H	M	T	C	A	T	D	T	Q	N	V	K	F	V	F	D
Template Known Secondary structure		G	G	G	S																		T	T	S		G	G	G	T		T	T			S																	T	T		T	T	B	T	T	B									T	T
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	D	R	Y	K	A	N	E	N	V	E	L	V	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	T	D	I	I	I	K	E	N	L	K	D	C	G
Template Known Secondary structure										S
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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