Job Description P33650 Confidence 99.12% Date Thu Jan 5 11:52:32 GMT 2012 Rank 105 Aligned Residues 135 % Identity 24% Template c1r5nA_ PDB info PDB header:translation Chain: A: PDB Molecule:eukaryotic peptide chain release factor gtp- PDBTitle: crystal structure analysis of sup35 complexed with gdp Resolution 2.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		K	K	L	T	I	G	L	I	G	N	P	N	S	G	K	T	T	L	F	N	Q	L	T	G	.	.	S	R	Q	R	V	G	N	W	A	G	V	T	V	E	R	K	E	G	Q	F	S	T	T	D	H	Q	V	T	L	V	D	L	P	G	T	Y	S	L	T	T	I	S	S	Q	T	S	L	D	E	Q	I	A	C	H
Query Conservation																										.	.
Alig confidence																										.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	H	V	N	I	V	F	I	G	H	V	D	A	G	K	S	T	L	G	G	N	I	L	F	L	T	G	M	V	D	K	R	T	M	E	K	I	E	R	E	A	K	R	A	Y	F	E	T	E	H	R	R	F	S	L	L	D	A	P	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure												T	T	S	S												T	T	S	S																				S	S											T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.										100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.																.																												.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.																.																												.	.	.	.	.	.	.	.
Query Sequence		Y	I	L	S	G	D	A	D	L	L	I	N	V	V	D	A	S	N	L	E	.	.	.	.	.	.	.	.	.	R	N	L	Y	L	T	L	Q	L	L	E	L	G	I	P	.	C	I	V	A	L	N	M	L	D	I	A	E	K	Q	N	I	R	I	E	I	D	A	L	S	A	R	L	.	.	.	.	.	.	.	.
Query Conservation																						.	.	.	.	.	.	.	.	.																.																												.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																	.	.	.	.	.	.	.	.	.																.																												.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	S	Q	A	D	I	G	V	L	V	I	S	A	R	R	G	E	F	E	A	G	F	E	R	G	G	Q	T	R	E	H	A	V	L	A	R	T	Q	G	I	N	H	L	V	V	V	I	N	K	M	D	E	P	S	V	Q	W	S	E	E	R	Y	K	E	C	V	D	K	L	S	M	F	L	R	R	V	A
Template Known Secondary structure		.	.	.	.	T	S		S									S	T	T					T	T	S	S	S													T	T		S	S								S	S	S	T	T		S	S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
								142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	G	C	P	V	I	P	L	V	S	T	R	G	R	G	I	E	A	L
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.
Template Conservation
Template Sequence		G	Y	N	S	K	T	D	V	K	Y	M	P	V	S	A	Y	T	G	Q	N	V	K	D	R
Template Known Secondary structure					T	T	T	T							B	T	T	T	T	B	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions